Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,318,003 – 4,318,107 |
Length | 104 |
Max. P | 0.810845 |
Location | 4,318,003 – 4,318,107 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 98.08 |
Mean single sequence MFE | -20.50 |
Consensus MFE | -19.06 |
Energy contribution | -19.06 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.40 |
Structure conservation index | 0.93 |
SVM decision value | 0.65 |
SVM RNA-class probability | 0.810845 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4318003 104 - 22224390 UUGUAACCGCCACCCACAUAAAGCGCACACCCGUACUGGCAAACACCUAGACCGACUAUCGAUGAUUAUUUAUCGCUUUUGCGUUUGCCAUUUCCACCGCCUCC ........((............(((......)))..((((((((................(((((....)))))((....))))))))))........)).... ( -19.30) >DroSec_CAF1 104390 104 - 1 UUGUACCCGCCACCCACAUAAAGCGCACACCCGUACUGGCAAACACCUAGGCCGACUAUCGAUGAUUAUUUAUCGCUUUUGCGUUUGCCAUUUCCACCGCCUCC ..((((.(((............))).......))))((((((((.(..((((.(.....)(((((....)))))))))..).)))))))).............. ( -20.40) >DroSim_CAF1 97748 104 - 1 UUGUACCCGCCACCCACAUAAAGCGCACACCCGUACUGGCAAACACCUAGGCCGACUAUCGAUGAUUAUUUAUCGCUUUUGCGUUUGCCAUUUCCACCGCCUCC ..((((.(((............))).......))))((((((((.(..((((.(.....)(((((....)))))))))..).)))))))).............. ( -20.40) >DroEre_CAF1 111385 104 - 1 UUGUACCCGCCACCCACAUAAAGCGCACACCCGUACUGGCAAACACCUAGGCCGACUAUCGAUGAUUAUUUAUCGCCUUUGCGUUUGCCAUUUCCACCGCCUCC ..((((.(((............))).......))))((((((((.(..((((.(.....)(((((....)))))))))..).)))))))).............. ( -23.10) >DroYak_CAF1 106113 104 - 1 UUGUACCCGCCACCCACAUAAAGCGCACACCCGUACUGGCAAACACCUAGGCCGACUAUCGAUGAUUAUUUAUCGCUAUUGCGUUUGCCAUUUCCACCGCCCCC ..((((.(((............))).......))))((((((((...(((.....)))..(((((....)))))((....)))))))))).............. ( -19.30) >consensus UUGUACCCGCCACCCACAUAAAGCGCACACCCGUACUGGCAAACACCUAGGCCGACUAUCGAUGAUUAUUUAUCGCUUUUGCGUUUGCCAUUUCCACCGCCUCC ........((............(((......)))..((((((((................(((((....)))))((....))))))))))........)).... (-19.06 = -19.06 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:15 2006