Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,317,321 – 4,317,414 |
Length | 93 |
Max. P | 0.708383 |
Location | 4,317,321 – 4,317,414 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 80.98 |
Mean single sequence MFE | -29.68 |
Consensus MFE | -20.40 |
Energy contribution | -20.40 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.62 |
Structure conservation index | 0.69 |
SVM decision value | 0.37 |
SVM RNA-class probability | 0.708383 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4317321 93 - 22224390 -------------------CGGCGCAUGCGUGUGUGCAUUUCAAUGCAACACUGAUAAAGGUGUUCAACGCUCGAUGACAUUAGCACCAUCCAAA-------UGCCGCAAUCAACUGAA -------------------(((((..((.((((.(((((....))))))))).......((((((.....(.....).....))))))...))..-------)))))............ ( -22.00) >DroPse_CAF1 122866 111 - 1 GGAUGUUGCCUGUUGGCAGCCGCGCAUGCGUGUGUGCAUUUCAAUGCAACACUGAUAAAGGUGUUCAACGCUCGAUGACAUUAGCACCAUCCAAA-------UGCCGCAAUCAACUUU- .(((((((((....)))))).((((((..((((.(((((....))))))))).......((((((.....(.....).....))))))......)-------)).))).)))......- ( -32.10) >DroGri_CAF1 122152 90 - 1 -------------------UGGCGCAUGCGUGUGUGCAUUUCAAUGCAACACUGAUAAAGGUGUUCAGCGCUCGAUGACAUUAGCACCAACCAAA-------UGCCGCAUGCCGCA--- -------------------..(((((((((.((((((((....)))).)))).......((((((((........))).....))))).......-------...)))))).))).--- ( -28.80) >DroWil_CAF1 121189 102 - 1 ----------------CAGCGGCGCAUGCGUGUGUGCAUUUCAAUGCAACACUGAUAAAGGUGUUCAACGCUCGAUGACAUUAGCACCAUCCAAAAUGCCGACGCCGCAAACAACCCG- ----------------..((((((...((((((((((((....)))).)))).......((((((.....(.....).....)))))).......))))...))))))..........- ( -31.10) >DroMoj_CAF1 169420 90 - 1 -------------------GCGCGCAUGCGUGUGUGCAUUUCAAUGCAACACUGAUAAAGGUGUUCAACGCUCGAUGACAUUAGCACCAGCCAAA-------UGCCGCAUGCCGCA--- -------------------(((.(((((((.((((((((....)))).)))).......((((((.....(.....).....)))))).......-------...)))))))))).--- ( -32.00) >DroPer_CAF1 124439 111 - 1 GGAUGUUGCCUGUUGGCAGCCGCGCAUGCGUGUGUGCAUUUCAAUGCAACACUGAUAAAGGUGUUCAACGCUCGAUGACAUUAGCACCAUCCAAA-------UGCCGCAAUCAACUUU- .(((((((((....)))))).((((((..((((.(((((....))))))))).......((((((.....(.....).....))))))......)-------)).))).)))......- ( -32.10) >consensus ___________________CCGCGCAUGCGUGUGUGCAUUUCAAUGCAACACUGAUAAAGGUGUUCAACGCUCGAUGACAUUAGCACCAUCCAAA_______UGCCGCAAUCAACU___ .....................(((...((((((.(((((....))))))))).......((((((.....(.....).....))))))...............)))))........... (-20.40 = -20.40 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:14 2006