Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,312,928 – 4,313,020 |
Length | 92 |
Max. P | 0.572234 |
Location | 4,312,928 – 4,313,020 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 80.07 |
Mean single sequence MFE | -24.08 |
Consensus MFE | -16.57 |
Energy contribution | -18.32 |
Covariance contribution | 1.75 |
Combinations/Pair | 1.13 |
Mean z-score | -1.25 |
Structure conservation index | 0.69 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.572234 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4312928 92 - 22224390 CAGUUACU--ACCACUGUAAUACCACAUGCAUUAUACCAGAUACCAUUUGGACUGGGGCGAUCCGAUGUUGCCCCCGAAAGCUUGUUACAGGAC ........--....((((((((......((......((((((...)))))).(.((((((((.....)))))))).)...)).))))))))... ( -25.60) >DroSec_CAF1 99060 92 - 1 CAGCUACU--ACCACUGUAAUACCACAUGCAUUAUACCAGAUACCAUUUGGACUGGGGCGAUGCGAUGUUGCCCCCGAAAGCUUGUUACAGGAC ........--....((((((((......((......((((((...)))))).(.((((((((.....)))))))).)...)).))))))))... ( -26.30) >DroSim_CAF1 92676 92 - 1 CAGCUACU--ACCACUGUAAUACCACAUGCAUUAUACCAGAUACCAUUUGGACUGGGGCGAUGCGAUGUUGCCCCCGAAAGCUUGUUACAGGAC ........--....((((((((......((......((((((...)))))).(.((((((((.....)))))))).)...)).))))))))... ( -26.30) >DroEre_CAF1 106191 80 - 1 ---------UACUACU-----GCCACAUGCAUUAUACCAGAUACCACUUGGACUGGGGCGAUGUGAUGUUGCCCCCGAAAGCUUGUUACAGGAC ---------.....((-----(..(((.((......((((.......)))).(.((((((((.....)))))))).)...)).)))..)))... ( -23.90) >DroYak_CAF1 101048 94 - 1 CAGCUACUAUACCACUGUAAUACCACAUGCAGUAUACCAGAUAGCAUUUGGACUGGGGCGAUGUGAUGUUGCCCCCGAAAGCUUGUUACAGGAC ..............(((((((((((.((((.((.......)).)))).))).(.((((((((.....)))))))).)......))))))))... ( -29.00) >DroAna_CAF1 118672 77 - 1 UUGCCACU--GCCACUG-----CCACU-G------CCAAGCUGCAACCUGGAGAGGAGAGUU---ACAUUGCCCUCGAAAGCUUGUUACAGGAC ...((.((--.((.((.-----(((.(-(------(......)))...))))).)))).((.---(((..((........)).))).)).)).. ( -13.40) >consensus CAGCUACU__ACCACUGUAAUACCACAUGCAUUAUACCAGAUACCAUUUGGACUGGGGCGAUGCGAUGUUGCCCCCGAAAGCUUGUUACAGGAC ..............(((((.....(((.((......(((((.....)))))...((((((((.....)))))))).....)).))))))))... (-16.57 = -18.32 + 1.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:13 2006