Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,307,833 – 4,307,941 |
Length | 108 |
Max. P | 0.551455 |
Location | 4,307,833 – 4,307,941 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 72.96 |
Mean single sequence MFE | -21.61 |
Consensus MFE | -1.72 |
Energy contribution | -1.92 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.39 |
Structure conservation index | 0.08 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.551455 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4307833 108 - 22224390 GCGGGCAGAGCCUUAAAUGUGCACUUAAAAAAAAAACA-GUUCGACUUAUGAUUGCUAG--UAUAUUGACACAAAAGUCAGAAUAUUGUUUUCAAUAU-AGAAGAAAACA-----CU ((((((...)))).......))................-.(((..((..(((..((.((--(((.(((((......))))).)))))))..)))....-))..)))....-----.. ( -16.11) >DroSec_CAF1 94071 106 - 1 GCGGGCAGAGCCUUAAAUGUGCACUAACAAAA-----A-GUUCGACAUACGAUUGCUAGUGUAUAUUGACACAAAAGCCAGAAAAUGGUUUUCAAUAUUAGAGGAAAUCC-----GU (((((.....((((.(((((((((((.(((..-----.-..(((.....)))))).)))))))))))......(((((((.....)))))))........))))...)))-----)) ( -27.90) >DroSim_CAF1 87665 106 - 1 GCGAGCAGAGCCUUAAAUGUGCACUAACAAAA-----A-GUUCGACAUACGAUUGCUAGUGUAUAUUGACACAAAAGCCAGAAAAUGGUUUUCAAUAUUAGAGGAAAUCC-----GU ....((.((.((((.(((((((((((.(((..-----.-..(((.....)))))).)))))))))))......(((((((.....)))))))........))))...)).-----)) ( -24.70) >DroEre_CAF1 101215 110 - 1 GCGGGCACAACAAGAAAAGUGCACUAAAAAAA-----AUAUUCAAUACAAAAUUACUAA--UGUUGUGGCAUAGAAGUAGGGAAAUAGCUUUGAAUAUAAGAGGAAAUGUCUCCCUA ...(.(((((((.....((((...........-----................))))..--))))))).).......((((((.(((.((((........))))...))).)))))) ( -19.03) >DroYak_CAF1 96030 109 - 1 CCGGGCACAACCAGAAAUGUGCACUAACAAAA-----A-GUUUGAUAUACAAUUACUAG--UAUAUUGACAUGAAAGCGGAAAAAUAGUUGGGAAUAUUUAAGGAAAUCUCUUUCCU (((.(((((........)))))..........-----.-(.(..((((((........)--)))))..)).......)))..(((((........))))).((((((....)))))) ( -20.30) >consensus GCGGGCAGAGCCUUAAAUGUGCACUAACAAAA_____A_GUUCGACAUACGAUUGCUAG__UAUAUUGACACAAAAGCCAGAAAAUAGUUUUCAAUAUUAGAGGAAAUCC_____CU ....(((.(........).)))............................................................................................... ( -1.72 = -1.92 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:12 2006