Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,303,374 – 4,303,482 |
Length | 108 |
Max. P | 0.770511 |
Location | 4,303,374 – 4,303,482 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 95.78 |
Mean single sequence MFE | -17.36 |
Consensus MFE | -16.56 |
Energy contribution | -16.60 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.05 |
Mean z-score | -1.19 |
Structure conservation index | 0.95 |
SVM decision value | 0.53 |
SVM RNA-class probability | 0.770511 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4303374 108 - 22224390 AAAUGUGAAUCUACAGCUCAGCGCAGACUUGCAGACAAGUCAAACAACACCAGAGAUCACGGGCAAAUAUCUUAAAUUCAAAUGGAAACAAAGGCAAACAGA---CACGCA ...((((..(((...((((......((((((....))))))...........(....)..))))..................((....)).........)))---..)))) ( -18.60) >DroSec_CAF1 89758 109 - 1 AAAUGUGAAUCUACAGCUUU--CCAGACUUGCAGACAAGUCAAACAACACCAGAGAUCACGGGCAAAUAUCUUAAAUUCAAAUGGAAACAAAGGCAAACAGACAACACGCA ....(((..(((...(((((--(((((((((....))))))...........(((((...........))))).........))))).....)))....)))...)))... ( -17.20) >DroSim_CAF1 83298 109 - 1 AAAUGUGAAUCUACAGCUCU--CCAGACUUGCAGACAAGUCAAACAACACCAGAGAUCACGGGCAAAUAUCUUAAAUUCAAAUGGAAACAAAGGCAAACAGACAACACGCA ....(((..(((...((((.--...((((((....))))))...........(....)..))))..................((....)).........)))...)))... ( -17.20) >DroEre_CAF1 96758 106 - 1 AAAUGUGAAUCUACAGCUCU--CCAGACUUGCAGACAAGUCAAACAACACCAGAGAUCACGGGCAAAUAUCUUAAAUUCAAAUGGAAACAAAGGCAAACAGA---CACGCA ...((((..(((...((((.--...((((((....))))))...........(....)..))))..................((....)).........)))---..)))) ( -18.10) >DroYak_CAF1 91521 106 - 1 AGAUGUAAAUCUACAGCUCU--CCAGACUUGCAGACAAGUCAAACAACACCAGAGAUCACGGGCAAAUAUCUUAAAUUCAAAUGGAAACAAAGGCAAACAGA---CACGCA ((((....))))...((...--...((((((....))))))........((.(((((...........))))).........((....))..))........---...)). ( -15.70) >consensus AAAUGUGAAUCUACAGCUCU__CCAGACUUGCAGACAAGUCAAACAACACCAGAGAUCACGGGCAAAUAUCUUAAAUUCAAAUGGAAACAAAGGCAAACAGA___CACGCA ....(((..(((...((((......((((((....))))))...........(....)..))))..................((....)).........)))...)))... (-16.56 = -16.60 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:10 2006