Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,294,815 – 4,294,906 |
Length | 91 |
Max. P | 0.903910 |
Location | 4,294,815 – 4,294,906 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 85.71 |
Mean single sequence MFE | -22.51 |
Consensus MFE | -18.68 |
Energy contribution | -18.72 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.06 |
Mean z-score | -1.93 |
Structure conservation index | 0.83 |
SVM decision value | 1.03 |
SVM RNA-class probability | 0.903910 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4294815 91 + 22224390 UUUGAUUCAUGAGGCGCUCUCGCUGCGAGAGUCCCAACCUCAACCUGAAUCUUCUGCACUGC-AAAAAAAUAUAUAUAUG--UACAU-AGAU--A-----CU ...(((((((((((.(((((((...))))))).....)))))...)))))).((((...(((-(..............))--))..)-))).--.-----.. ( -20.44) >DroSec_CAF1 81408 90 + 1 UUUGAUUCAUGAGGCGCUCUCGCUGCGAGAGUCCCAACCUCAACCUGAAUCUUGGGCACUGC-AAAAAAAAA-AUACAUA--UAUGU-AGAU--A-----CU ...(((((((((((.(((((((...))))))).....)))))...)))))).......((((-(........-.......--..)))-))..--.-----.. ( -21.83) >DroSim_CAF1 74954 91 + 1 UUUGAUUCAUGAGGCGCUCUCGCUGCGAGAGUCCCAACCUCAACCUGAAUCUUGGGCACUGC-AAAAAAAAAUAUACAUA--UAUGU-AGAU--A-----CU ...(((((((((((.(((((((...))))))).....)))))...)))))).......((((-(................--..)))-))..--.-----.. ( -21.77) >DroEre_CAF1 88227 96 + 1 UUUGAUUCAUGAGGCGCUCUCGCUGCGAGAGCCCCAACCUCAACCUAAAUCUUUGGCACUGAGAAAAAAGAA-GUACACACGUAUUUUGGAUGCA-----CU ..((((((.((.((.(((((((...)))))))))))..((((..((((....))))...))))......(((-((((....))))))))))).))-----.. ( -23.40) >DroYak_CAF1 82544 100 + 1 UUUGAUUCAUGAGGCGCUCUCGCUGCGAGAGUCCCAACCUCAACCUGAAUCUUUGGCACUGC-AAAAAACAA-AUAUAUAUAUAUUUUGGAAACAAAGUUCU ...(((((((((((.(((((((...))))))).....)))))...))))))((((......)-)))......-..........((((((....))))))... ( -25.10) >consensus UUUGAUUCAUGAGGCGCUCUCGCUGCGAGAGUCCCAACCUCAACCUGAAUCUUGGGCACUGC_AAAAAAAAA_AUACAUA__UAUGU_AGAU__A_____CU ...(((((((((((.(((((((...))))))).....)))))...))))))................................................... (-18.68 = -18.72 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:02 2006