Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,274,372 – 4,274,470 |
Length | 98 |
Max. P | 0.578472 |
Location | 4,274,372 – 4,274,470 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 80.69 |
Mean single sequence MFE | -36.32 |
Consensus MFE | -17.65 |
Energy contribution | -17.65 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.21 |
Mean z-score | -2.36 |
Structure conservation index | 0.49 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.578472 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4274372 98 + 22224390 ---ACAACAGCACCCGGCCCCACCACCACCACCGUACUUUCCAGCUGCGGCACUGGCCGCUCUAGCUGGAAGUCCGGCCGGACCGCAUCCGGGUCUGUAUC ---...((((.((((((........((....(((.((((.(((((((((((....)))))...)))))))))).)))..)).......))))))))))... ( -42.86) >DroPse_CAF1 74314 98 + 1 ACCGCAACAGCA---GCCGCCACCACCGCCGCCGUACUUUCCCGCCGCCGCUUUGGCCGCUCUGGCCGGUAGUCCAGCCGGACCACAUCCAGGGCUGUAUU .........(((---(((((..(((..((.((.((........)).)).))..)))..)).((((...((.((((....)))).))..))))))))))... ( -34.00) >DroSec_CAF1 60852 98 + 1 ---GCAACAGCACCCGGCCCCACCACCACCACCGUACUUUCCAGCUGCGGCACUGGCCGCUCUAGCUGGAAGUCCGGCCGGACCACAUCCGGGUCUGUAUC ---...((((.((((((........((....(((.((((.(((((((((((....)))))...)))))))))).)))..)).......))))))))))... ( -42.86) >DroWil_CAF1 73475 90 + 1 -----AACAA------CAGCCACCACCUCCACCGUAUUUUCCCGCCGCUGCAUUGGCCGCAUUGGCUGGCAGUCCGGCUGGACCACAUCCUGGUCUAUAUC -----.....------(((((...........((........))..(((((...((((.....)))).)))))..)))))(((((.....)))))...... ( -26.40) >DroYak_CAF1 62481 96 + 1 -----AACAGCACCCGGCACCACCACCACCCCCGUACUUUCCAGCUGCGGCACUGGCCGCCCUAGCUGGCAGUCCGGCCGGACCGCAUCCGGGCCUGUAUC -----.((((..(((((........................((((((((((....)))))...)))))((.((((....)))).))..))))).))))... ( -37.80) >DroPer_CAF1 75559 98 + 1 ACCGCAACAGCA---GCCGCCACCACCGCCGCCGUACUUUCCCGCCGCCGCUUUGGCCGCUCUGGCCGGUAGUCCAGCCGGACCACAUCCAGGGCUGUAUU .........(((---(((((..(((..((.((.((........)).)).))..)))..)).((((...((.((((....)))).))..))))))))))... ( -34.00) >consensus ___GCAACAGCA___GCCGCCACCACCACCACCGUACUUUCCAGCCGCGGCACUGGCCGCUCUAGCUGGAAGUCCGGCCGGACCACAUCCGGGUCUGUAUC ......((((.....................(((.(((..((.((((.(((.......))).)))).)).))).)))(((((.....))).)).))))... (-17.65 = -17.65 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:55 2006