Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,267,741 – 4,267,839 |
Length | 98 |
Max. P | 0.844614 |
Location | 4,267,741 – 4,267,839 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 75.59 |
Mean single sequence MFE | -21.65 |
Consensus MFE | -13.64 |
Energy contribution | -14.64 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.57 |
Structure conservation index | 0.63 |
SVM decision value | 0.76 |
SVM RNA-class probability | 0.844614 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4267741 98 + 22224390 UUGCACUGUAAUUGAGCAAUUGCAGUGGCCACCCA-----------ACCA---CCCACAGCCC---ACGCCCACCCAUUCAAAACGCCCACAAUGGCUGGCAAUUUACUUGACGC ...((((((((((....))))))))))((((....-----------....---......((..---..))...............(((......))))))).............. ( -21.30) >DroSec_CAF1 54375 98 + 1 UUGCACUGUAAUUGAGCAAUUGCAGUGGCCACCCA-----------ACCA---CCCACAGCCC---ACGCCCACCCAUCCAAAACGCCCACAAUGGCUGGCAAUUUACUUGACGC ...((((((((((....))))))))))((((....-----------....---......((..---..))...............(((......))))))).............. ( -21.30) >DroEre_CAF1 61342 109 + 1 UUGCACUGUAAUUGAGCAAUUGCAGUGGCCACCCACUCGCCGCCCAACCG---CCCACAGCAC---ACGCCCACCCAUCCAUUAUGCCCACAAUGGCUGGCAGUUUACUUGACGC ...((((((((((....))))))))))((((.(((......((......)---).....((..---..)).......................))).)))).(((.....))).. ( -23.40) >DroYak_CAF1 55278 87 + 1 UUGCACUGUAAUUGAGCAAUUGCAGUGGCCACCCAA-------------------------AA---ACACCCACCCAUCCAUUACGCCCACAAUGGCUGGCAAUUUACUUGACGC ...((((((((((....))))))))))((((.(((.-------------------------..---...........................))).)))).............. ( -19.41) >DroAna_CAF1 65535 83 + 1 UUGCACUGUAAUUGAGCAAUUGCAGUCGCCACCCA-----------AGCG---C-CAGAG----------CCACCCACCCA-------CAAAUGGGCUGGCAAUUUGCUUGGCGC ..(((((((((((....))))))))).))...(((-----------((((---.-....(----------(((((((....-------....)))).))))....)))))))... ( -31.60) >DroPer_CAF1 66686 100 + 1 UUGCACUGUAAUUGAGCAAUUGCCA--CCCACCCA-----------AACAAGCCCCAAAGCCCCAAACUCCACCCCA--CACCACACCAACAACGGCUGGCAAUUUACUUGGCGC ..((...((((.((.((....))))--........-----------.....(((....((((...............--...............)))))))...))))...)).. ( -12.91) >consensus UUGCACUGUAAUUGAGCAAUUGCAGUGGCCACCCA___________ACCA___CCCACAGCCC___ACGCCCACCCAUCCAAAACGCCCACAAUGGCUGGCAAUUUACUUGACGC ...((((((((((....))))))))))((((.((............................................................)).)))).............. (-13.64 = -14.64 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:52 2006