Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,262,913 – 4,263,005 |
Length | 92 |
Max. P | 0.500000 |
Location | 4,262,913 – 4,263,005 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 88.03 |
Mean single sequence MFE | -33.25 |
Consensus MFE | -24.95 |
Energy contribution | -26.07 |
Covariance contribution | 1.11 |
Combinations/Pair | 1.04 |
Mean z-score | -2.62 |
Structure conservation index | 0.75 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4262913 92 + 22224390 ACAACGCUCGAUUUCAUUUGAUGUGCCCACUGGCGCGUCC-AUUUGGUCAGAAUCAUUUAGCUGAUUGGUCAGAGCA--AUGAUAAGAAAUCGGG ......(((((((((....((((((((....)))))))).-...........((((((...((((....))))...)--)))))..))))))))) ( -31.10) >DroPse_CAF1 59924 91 + 1 ACAACGCUCGAUUUCAUUUGAUGUGCCCGCUGGCGCGUCCCCUUUGGUCAGACUCAUUUAGUUGAUUGGUCAGAGGGUAGUGGC----AGACGGG ....(((((((......)))).)))(((((((.(((...(((((((..(((..(((......))))))..)))))))..))).)----)).)))) ( -37.60) >DroSim_CAF1 45280 92 + 1 ACAACGCUCGAUUUCAUUUGAUGUGCCCACUGGCGCGUCC-AUUUGGUCAGAAUCAUUUAGCUGAUUGGUCAGAGGA--AUGGUAAGAAAUCGGG ......(((((((((....((((((((....)))))))).-...........(((((((..((((....))))..))--)))))..))))))))) ( -33.70) >DroEre_CAF1 56706 92 + 1 GCAACGCUCGAUUUCAUUUGAUGUGCCCACUGGCGCGUCC-GUUUGGUCAGAUUCAUUUAGCUGAUUGGUCAGUGGA--UUGGCAAGAAAUCGUG ........(((((((....((((((((....)))))))).-.....(((((.((((((.(.(.....).).))))))--)))))..))))))).. ( -28.50) >DroYak_CAF1 50687 92 + 1 ACAACGCUCGAUUUCAUUUGAUGUGCCCACUGGCGCGUCC-AUUUGGUCAGAUUCAUUUAGCUGAUUGGUCAGAGGA--AUGGUCAGAAAUCGCG ....(((..((((((....((((((((....)))))))).-.........(((.(((((..((((....))))..))--)))))).))))))))) ( -31.00) >DroPer_CAF1 61064 91 + 1 ACAACGCUCGAUUUCAUUUGAUGUGCCCGCUGGCGCGUCCCCUUUGGUCAGACUCAUUUAGUUGAUUGGUCAGAGGGUAGUGGC----AGUCGGG ....(((((((......)))).)))(((((((.(((...(((((((..(((..(((......))))))..)))))))..))).)----)).)))) ( -37.60) >consensus ACAACGCUCGAUUUCAUUUGAUGUGCCCACUGGCGCGUCC_AUUUGGUCAGAAUCAUUUAGCUGAUUGGUCAGAGGA__AUGGCAAGAAAUCGGG ......(((((((((....((((((((....))))))))...((((..(((..(((......))))))..))))............))))))))) (-24.95 = -26.07 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:51 2006