Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,255,213 – 4,255,314 |
Length | 101 |
Max. P | 0.590169 |
Location | 4,255,213 – 4,255,314 |
---|---|
Length | 101 |
Sequences | 3 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 91.30 |
Mean single sequence MFE | -17.97 |
Consensus MFE | -17.33 |
Energy contribution | -17.67 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.31 |
Structure conservation index | 0.96 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.590169 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4255213 101 + 22224390 AUGACAUCGGGAAGCGACAAGCGAAACGCAACCUGAACAUAAUUACAACAAUUUGUUGUCUAGUGUUUGACAACAACAGCAACAGCAAACAGCAACAAAGG ......(((((..(((..........)))..)))))................((((((((........))))))))..((....))............... ( -20.30) >DroSim_CAF1 36183 94 + 1 AUGACAUCGGGAAGCGACAAGCGAAACGCAACCUGAACAUAAUUACAACAAUUUGUUGUCUAGUGUUUGACAACAACAGCAA-------CAGCAACAAAGG ......(((((..(((..........)))..)))))................((((((((........))))))))..((..-------..))........ ( -20.30) >DroYak_CAF1 43042 94 + 1 AUGACAUCGGGAAGCGACAAGCGAAACGCAACCUGAACAUAAUUACAACAAUUUGUUUUCUAGUGUUUGACAACAACAG------CA-ACAACAACAAAAG ......(((((..(((..........)))..)))))................(((((..((..((((....))))..))------.)-))))......... ( -13.30) >consensus AUGACAUCGGGAAGCGACAAGCGAAACGCAACCUGAACAUAAUUACAACAAUUUGUUGUCUAGUGUUUGACAACAACAGCAA___CA_ACAGCAACAAAGG ......(((((..(((..........)))..)))))................((((((((........))))))))......................... (-17.33 = -17.67 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:50 2006