Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,254,093 – 4,254,201 |
Length | 108 |
Max. P | 0.812633 |
Location | 4,254,093 – 4,254,201 |
---|---|
Length | 108 |
Sequences | 4 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 87.48 |
Mean single sequence MFE | -40.65 |
Consensus MFE | -32.17 |
Energy contribution | -33.73 |
Covariance contribution | 1.56 |
Combinations/Pair | 1.03 |
Mean z-score | -1.84 |
Structure conservation index | 0.79 |
SVM decision value | 0.65 |
SVM RNA-class probability | 0.812633 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4254093 108 - 22224390 CUCGAUUCCCAGUUCCGGGAGAUGGCGUGUUUGGCCAACUUAUGAGACCGGACACGGACAUCGUCACGGACACGGAAAGGGACAUUGGCAUGGGGAUUGGGAUUGGG--U ((((((.(((((((((....((((.((((((((((((.....)).).)))))))))..))))((((.(..(.(.....))..)..))))...)))))))))))))))--. ( -42.30) >DroSim_CAF1 35257 110 - 1 CUCGAUUCCCAGUUCCGGGAGAUGGCGUGUUUGGCCAACUUAUGAGACCGGACACGGACAUCGUCACGGACACGGAAAGGGACAUUGGCAUGGGGAUUGGGAUUGGUAUU ((((((((((((((((((..((((.((((((((((((.....)).).)))))))))..))))..).)))).))(........).......)))))))))))......... ( -41.00) >DroEre_CAF1 47714 95 - 1 CUCGACUCCCAGUUCCCGGAGAUGGCGUGUUUGGCCAC-----------GGACACGGACAUCGUCACGGGCACGGAGAGGGACAUUGGCAUGGGGAUUGGGAUUGG---- ..(((.((((((((((((..((((.((((((((....)-----------)))))))..))))(((.((....))......))).......))))))))))))))).---- ( -40.20) >DroYak_CAF1 41670 101 - 1 CUCGAUUCCCAGUGGCCGGAGAUGGCGUGUUUGGCCAACUUAUG-----AGACACGGACAUCGUCACGGACACGGAAAGGGACAUUGGCAUGGGGAUUGGGACUGG---- (((((((((((...(((((.((((.(((((((.(........).-----)))))))..))))(((.((....))......))).))))).))))))))))).....---- ( -39.10) >consensus CUCGAUUCCCAGUUCCCGGAGAUGGCGUGUUUGGCCAACUUAUG_____GGACACGGACAUCGUCACGGACACGGAAAGGGACAUUGGCAUGGGGAUUGGGAUUGG____ ((((((((((((((((.(..((((.(((((((((.............)))))))))..))))..).((....))....))))).......)))))))))))......... (-32.17 = -33.73 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:49 2006