Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,240,274 – 4,240,381 |
Length | 107 |
Max. P | 0.799520 |
Location | 4,240,274 – 4,240,381 |
---|---|
Length | 107 |
Sequences | 4 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 91.26 |
Mean single sequence MFE | -25.59 |
Consensus MFE | -20.24 |
Energy contribution | -20.05 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.08 |
Mean z-score | -1.97 |
Structure conservation index | 0.79 |
SVM decision value | 0.61 |
SVM RNA-class probability | 0.799520 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4240274 107 - 22224390 AACUCACAUGUCGCCUUAUUAGCAAACCCAUGGCCAACUCAUUGAGUGGAUUCCUUCAGCUUCUGGUUUUUCUCUUGCUGUCUGUUUUUGCCAUUCACUUGCUGGCA ......((((..((.......)).....))))((((.(....(((((((.......((((....((....))....))))..........)))))))...).)))). ( -21.43) >DroSec_CAF1 27324 103 - 1 AACUCACAUGUCGCCUUAUUAGCAAACCCAUGGCCAACUCAUUGAGUGGAUUCCUCCAGCUUCUGGUUUUUCUUUAGCG----UUUUUUGCCAUUCACUUGCUGGCA ............(((.....(((((....(((((..((((...))))(((....))).(((...((.....))..))).----......)))))....)))))))). ( -21.40) >DroEre_CAF1 32933 102 - 1 AACUCACAUGUCGCCUUAUUAGCAA-CCCAGGGCCAACUCAUUGAGUGGAUUUCUCCAGCUUCUGGUUUUCCUUUUGCU----GCUUUAGCCAUUCACUUGCUGGCA ............(((.....(((((-....(((....)))..(((((((.......((((....((....))....)))----)......))))))).)))))))). ( -25.02) >DroYak_CAF1 27216 102 - 1 AACUCACAUGUCGCCUUAUUAGCAA-GCCAUGGCCAACUCAUUGAGUGGAUUCCGCCAGCUUCUGGUUUUCCUUUUGCU----GUUUUGGCCAUUCACUUGCUGGCA ............(((.....(((((-(..((((((((..((..(((.(((....(((((...)))))..))).)))..)----)..))))))))...))))))))). ( -34.50) >consensus AACUCACAUGUCGCCUUAUUAGCAA_CCCAUGGCCAACUCAUUGAGUGGAUUCCUCCAGCUUCUGGUUUUCCUUUUGCU____GUUUUUGCCAUUCACUUGCUGGCA ............(((.....(((((....(((((..((((...))))(((.....((((...))))...))).................)))))....)))))))). (-20.24 = -20.05 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:47 2006