Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 527,925 – 528,034 |
Length | 109 |
Max. P | 0.719084 |
Location | 527,925 – 528,034 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 78.53 |
Mean single sequence MFE | -39.60 |
Consensus MFE | -19.76 |
Energy contribution | -19.08 |
Covariance contribution | -0.68 |
Combinations/Pair | 1.29 |
Mean z-score | -2.00 |
Structure conservation index | 0.50 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.719084 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 527925 109 - 22224390 AUCGUAUGUAUCUGCCCAGCGGCC---AAGGGGUUAAUCAUUUGC----CCAUAUCCGCUGGGG-CUCUAGCGUUGCU---CCCUUGCGCUGUUUAGGUCUUUCAUUUGGCCAUUUGGCC ...(...(.(((((((((((((..---...((((.........))----))....)))))))).-...((((((....---.....))))))..))))))...)....((((....)))) ( -36.90) >DroSec_CAF1 14631 112 - 1 AUGGUUUGCAUCUGUCCAGCGGCCUUCAAGGGGUUAAUCAUUAGC----CCAUAUCCGCUGGGA-CUCUGGCGUUGCU---CCGUUGCGCUGCUUGGGUCUUUCGUUUGGCCAUUUGGCU ((((((.((......(((((((........((((((.....))))----))....)))))))((-(((.((((.(((.---.....))).)))).)))))....))..))))))...... ( -41.30) >DroSim_CAF1 14950 112 - 1 AUGGUUUGUAUCUGUCCAGCGGCCAUCAAGGGGUUAAUCAUUAGC----CCAUAUCCGCUGGGA-CUCUGGCGUUGCU---CCGUUGCGCUGCUUGGGUCUUUCGUUUGGCCAUUUGGCC ...............(((((((........((((((.....))))----))....)))))))((-(((.((((.(((.---.....))).)))).)))))........((((....)))) ( -41.20) >DroEre_CAF1 19541 109 - 1 AUGAUAUGAAUUUGACCGGCAGUCAUCAAGGGGUUAAUCAUCCU----GGCACA---GCUGCGA-CUUUGGCGCUGCU---CUGUUGUGCUGCUUAGGUCUUUCAUUUGGCCUUUUGGCC .....(((((...(((((((((.(((...(((((.....)))))----((((.(---((.(((.-(....)))).)))---.))))))))))))..)))).)))))..((((....)))) ( -37.10) >DroYak_CAF1 13968 120 - 1 AUGGUAUCAAUUUGACCAUCGGUCACCAAGGGGUUAAUCAUCCGCCGGGGCUUAACCCCUACGCCCUGUAGCGCUGUUGUGCUGUUGCGCUGCUUAGGUCUUUCAUUUGGCCUUUUGGCA .((((........((((...))))))))(((((((((...(((....))).)))))))))..(((..(((((((............)))))))..(((((........)))))...))). ( -41.50) >consensus AUGGUAUGAAUCUGACCAGCGGCCAUCAAGGGGUUAAUCAUUAGC____CCAUAUCCGCUGGGA_CUCUGGCGUUGCU___CCGUUGCGCUGCUUAGGUCUUUCAUUUGGCCAUUUGGCC ...............(((..(((((..(((((.((((.(..........(((.......))).......(((((.((......)).)))))).)))).)))))....)))))...))).. (-19.76 = -19.08 + -0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:05 2006