Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,239,671 – 4,239,768 |
Length | 97 |
Max. P | 0.985809 |
Location | 4,239,671 – 4,239,768 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 72.44 |
Mean single sequence MFE | -12.88 |
Consensus MFE | -11.34 |
Energy contribution | -11.74 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -0.64 |
Structure conservation index | 0.88 |
SVM decision value | 2.02 |
SVM RNA-class probability | 0.985809 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4239671 97 + 22224390 ACGGUUCUAGAGAUG--CCUCGAUUUCCGCAGAAAUUGCUAAUAGAAUCACAGCCCU------CCUAAACCCCCAACACCCCUUUAAACACCCCUUUGCCGCAGC ..((((((((((...--.)))((((((....)))))).....)))))))........------.......................................... ( -12.40) >DroSec_CAF1 26737 87 + 1 ACGGUUCUAGAGAUG--CCUCGAUUUCCGCAGAAAUUGCUAAUAGAAUCACAGCCCU------CCUAAAACCCCUAC----------ACACCCCUUUGCCCCAGC ..((((((((((...--.)))((((((....)))))).....)))))))........------..............----------.................. ( -12.40) >DroEre_CAF1 32335 89 + 1 ACGGUUCUAGAGAUG--CCUCGAUUUCCGCAGAAAUUGCUAAUAGAAUCACAGCCCCUUGGCCCCUACACU-CCUACACUCCU----ACACCCCCU--------- ..((((((((((...--.)))((((((....)))))).....)))))))...(((....))).........-...........----.........--------- ( -15.30) >DroYak_CAF1 26608 77 + 1 ACGGUUCUAGAGAUG--CCUCGAUUUCCGCAGAAAUUGCUAAUAGAAUCACAGCACC------------CC-CCAACCCUCCA----ACGUACCCC--------- ..((((((((((...--.)))((((((....)))))).....)))))))........------------..-...........----.........--------- ( -12.40) >DroAna_CAF1 31051 78 + 1 ACGGUUCUUGAGAUGAGCGUCGAUUUCCGCGGAAAUUGCUAAUAGAAUCACAGCCCC------UC----CCCCCCACAGUCC---------CCCAU--------A ..((((((.......(((...((((((....)))))))))...))))))........------..----.............---------.....--------. ( -11.90) >consensus ACGGUUCUAGAGAUG__CCUCGAUUUCCGCAGAAAUUGCUAAUAGAAUCACAGCCCC______CCUA_ACCCCCAACACUCC_____ACACCCCCU_________ ..((((((((((......)))((((((....)))))).....)))))))........................................................ (-11.34 = -11.74 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:46 2006