Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,227,580 – 4,227,672 |
Length | 92 |
Max. P | 0.678415 |
Location | 4,227,580 – 4,227,672 |
---|---|
Length | 92 |
Sequences | 3 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 88.85 |
Mean single sequence MFE | -22.63 |
Consensus MFE | -16.99 |
Energy contribution | -18.77 |
Covariance contribution | 1.78 |
Combinations/Pair | 1.04 |
Mean z-score | -2.38 |
Structure conservation index | 0.75 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.678415 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4227580 92 - 22224390 UACUUACAUUCAAAUAAACUGUG-------AAUACUGUACACUCUUUUAGAAUGAAUGAUUCAUUUGCCCUUAUGGAUGCAUUCAUGCAGAUGUCCAAG ......((((((..((((..(((-------.........)))...))))...))))))...(((((((....(((....)))....)))))))...... ( -15.40) >DroSec_CAF1 14948 98 - 1 UACUUACAUUCAUAUAAGCUGUGCAGUAAAAAUACUGUACACUCUUUUAGAAAGAAUGCUUCAUUUC-GCCUAUGGAUGCAUUCAUGCAGGUGUCCAAG (((((.(((((.((.(((.(((((((((....)))))))))..))).))))).(((((((((((...-....))))).)))))).)).)))))...... ( -26.00) >DroSim_CAF1 20304 98 - 1 UACUUACAUUCAUAUAAACUGUGCAGUAGAAAUACUGUACACUCUUUUAGAAAGAAUGCUUCAUUUC-GCCUAUGGAUGCAUUCAUGCAGAUGUCCAAG .....(((((..(((....(((((((((....)))))))))............(((((((((((...-....))))).)))))))))..)))))..... ( -26.50) >consensus UACUUACAUUCAUAUAAACUGUGCAGUA_AAAUACUGUACACUCUUUUAGAAAGAAUGCUUCAUUUC_GCCUAUGGAUGCAUUCAUGCAGAUGUCCAAG .....(((((.........(((((((((....)))))))))............(((((((((((........))))).)))))).....)))))..... (-16.99 = -18.77 + 1.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:37 2006