Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,226,352 – 4,226,447 |
Length | 95 |
Max. P | 0.617293 |
Location | 4,226,352 – 4,226,447 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 80.26 |
Mean single sequence MFE | -28.10 |
Consensus MFE | -22.15 |
Energy contribution | -22.15 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.17 |
Structure conservation index | 0.79 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.617293 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4226352 95 + 22224390 UGAGGCGUUGAUGGCGAUGGCGCUGAAGCUGGCGCGCAUGUGCAA--CGCAGCCACAAAAUCGCAAUUGCCGGG-------AC--CAAAAACCAAAAUGAAAAAAA ...((((......(((((.(((((......)))))((.((((...--))))))......)))))...))))((.-------..--......))............. ( -25.10) >DroPse_CAF1 16483 84 + 1 UGAGGCGUUGAUGGCGAUGGCGCUGAAGCUGGCGCGCAUGCGCAGAGCACAACCGCAAAAUCGCA-UUGCCAGC---CA--GCCCCAAAA---------------- ...((.((((.(((((((((((((......)))))((.(((.....))).....)).......))-))))))..---))--)).))....---------------- ( -31.20) >DroSim_CAF1 19135 94 + 1 UGAGGCGUUGAUGGCGAUGGCGCUGAAGCUGGCGCGCAUGUGCAU--CGCAGCCACAAAAUCGCAAUUGCCGGG-------AC--CGAAAACCAAAAUGAAA-AAA ...((((......(((((.(((((......)))))((.((((...--))))))......)))))...))))((.-------..--......)).........-... ( -25.10) >DroEre_CAF1 13716 94 + 1 UGAGGCGUUGGUGGCGAUGGCGCUGAAGCUGGCGCGCAUGCGCAA--CGCAACCACAAAAUCGCAAUUGCCGGG-------GC--CAAAAACCAAAAUGAAA-AAA ...(((.(((((.(((((.(((((......)))))...((((...--))))........)))))....))))).-------))--)................-... ( -30.70) >DroYak_CAF1 13710 101 + 1 UGAGGCGUUGAUGGCGAUGGCGCUGAAGCUGGCGCGCAUGUGCAA--CGCAACCACAAAAUCGCAAUUGCCGGGACCCGGGAC--CUAAAACCAAAAUGAAA-AAA ....((((((...((.((((((((......))))).))))).)))--)))...................((((...))))...--.................-... ( -25.30) >DroPer_CAF1 16126 84 + 1 UGAGGCGUUGAUGGCGAUGGCGCUGAAGCUGGCGCGCAUGCGCAGAGCACAACCGCAAAAUCGCA-UUGCCAGC---CA--GCCCCAAAA---------------- ...((.((((.(((((((((((((......)))))((.(((.....))).....)).......))-))))))..---))--)).))....---------------- ( -31.20) >consensus UGAGGCGUUGAUGGCGAUGGCGCUGAAGCUGGCGCGCAUGCGCAA__CGCAACCACAAAAUCGCAAUUGCCGGG_______AC__CAAAAACCAAAAUGAAA_AAA ...((((......(((((.(((((......)))))((....))................)))))...))))................................... (-22.15 = -22.15 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:36 2006