Locus 1401

Sequence ID X_DroMel_CAF1
Location 4,226,192 – 4,226,292
Length 100
Max. P 0.991621
window2237

overview

Window 7

Location 4,226,192 – 4,226,292
Length 100
Sequences 5
Columns 106
Reading direction reverse
Mean pairwise identity 94.34
Mean single sequence MFE -34.58
Consensus MFE -32.66
Energy contribution -32.82
Covariance contribution 0.16
Combinations/Pair 1.03
Mean z-score -1.66
Structure conservation index 0.94
SVM decision value 2.28
SVM RNA-class probability 0.991621
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4226192 100 - 22224390
GGCGUUGAGUGCGAUGGA------GAGGGGAACACACGCGCUGUCUGCUUCUUAGAGAGAGAAAGACACGCGUGCGCACUAACAAGCGACGACAGCUGAGAUCAGU
..((((.((((((.....------...(....).((((((.(((((..(((((...)))))..)))))))))))))))))....))))......((((....)))) ( -35.40)
>DroSec_CAF1 13592 100 - 1
GGCGUUGAGUGCGAUGGA------GAGGGGAACACACGCGCUGUCUGCUUCUUAGAGAGAGAAAGACACGCGUGCGCACUAACAAGCGACGACAGCUGAGAUCAGU
..((((.((((((.....------...(....).((((((.(((((..(((((...)))))..)))))))))))))))))....))))......((((....)))) ( -35.40)
>DroSim_CAF1 18975 100 - 1
GGCGUUGAAUGGGAUGGA------GAGGGGAACACACGCGCUGUCUGCUUCUUAGAGAGAGAAAGACACGCGUGCGCACUAACAAGCGACGACAGCUGAGAUCAGU
..(((((..((...(((.------...(....).((((((.(((((..(((((...)))))..)))))))))))....))).))..)))))...((((....)))) ( -30.00)
>DroEre_CAF1 13550 106 - 1
GACGUUGAGUGCGAGGGAGAGGGAGAGGGGAACACACGCGCUGUCUGCUUCUUAGAGGGAGAGAGACACGCGUGCGCACUAACAAGCGACGACAGCUGAGAUCAGU
..((((.((((((..............(....).((((((.(((((.(((((....)))))..)))))))))))))))))....))))......((((....)))) ( -37.50)
>DroYak_CAF1 13550 100 - 1
GACGUUAAGUGCGAGGGA------GAGGGGAACACACGCGCUGUCUGCUUCUUAGAGGGAGAAAGACACGCGUGCGCACUAACAAGCGACGACAGCUGAGAUCAGU
...((((.(((((.....------...(....).((((((.(((((.(((((....)))))..))))))))))))))))))))...........((((....)))) ( -34.60)
>consensus
GGCGUUGAGUGCGAUGGA______GAGGGGAACACACGCGCUGUCUGCUUCUUAGAGAGAGAAAGACACGCGUGCGCACUAACAAGCGACGACAGCUGAGAUCAGU
..((((.((((((..............(....).((((((.(((((..((((.....))))..)))))))))))))))))....))))......((((....)))) (-32.66 = -32.82 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:35 2006