Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,224,871 – 4,224,963 |
Length | 92 |
Max. P | 0.582201 |
Location | 4,224,871 – 4,224,963 |
---|---|
Length | 92 |
Sequences | 3 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 82.30 |
Mean single sequence MFE | -24.85 |
Consensus MFE | -21.15 |
Energy contribution | -21.27 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.04 |
Mean z-score | -1.25 |
Structure conservation index | 0.85 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.582201 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4224871 92 - 22224390 UCAGUGCUUUGUCACUGUUCUUUUGUGAUCGUUUUCAAAAUUCUUAUAAAAGGUUCUAUAUAGAUCAGGAUCUAGAGGAGUCAGAGCACCGC--------------------- ...((((((((.(.....((((((((((..(((.....)))..))))))))))((((...(((((....))))).))))).))))))))...--------------------- ( -24.60) >DroSec_CAF1 12373 112 - 1 UCAGUGCUUUGGCACUGUUCUUAUGUGAUCGUUUCCA-AAUUCUUAUAAAAGGUUCUAUUUAGAGCAGGAUUCAGAGGAGUCAGAGCACCGCAAUCAUUCAUAUCUUCAUAAG ...((((((((((.(((((((.(((.((((.......-.............)))).)))..)))))))...((....))))))))))))........................ ( -25.25) >DroSim_CAF1 17751 113 - 1 UCAGUGCUUUGGCACUGUUCUUAUGUGAUCGUUUCCAAAAUUCUUAUAAAAGGUUCUAUUCAGAGCAGGAUUCAGAGGAGUCAGAGCACCGCAAUCAUUCAUAUCUUCAUAAG ...((((((((((.(((((((.(((.((((.....................)))).)))..)))))))...((....))))))))))))........................ ( -24.70) >consensus UCAGUGCUUUGGCACUGUUCUUAUGUGAUCGUUUCCAAAAUUCUUAUAAAAGGUUCUAUUUAGAGCAGGAUUCAGAGGAGUCAGAGCACCGCAAUCAUUCAUAUCUUCAUAAG ...((((((((..(((.((((.....((((............(((....)))(((((....)))))..)))).)))).)))))))))))........................ (-21.15 = -21.27 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:33 2006