Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 527,638 – 527,731 |
Length | 93 |
Max. P | 0.500000 |
Location | 527,638 – 527,731 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 86.68 |
Mean single sequence MFE | -30.35 |
Consensus MFE | -20.99 |
Energy contribution | -21.39 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.66 |
Structure conservation index | 0.69 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 527638 93 - 22224390 UGAAAGUAAAAGCGACACACUCUCAAACAUGCAAAUCCCGAUGGUCGCUAAUGGCGCCCA---------------------------GUGUGCUGGGCAUCUUGGCCCAUAUAGGCGCAA ..........((((((.((.((.................))))))))))....(((((..---------------------------.((((.(((((......)))))))))))))).. ( -28.23) >DroSec_CAF1 14347 91 - 1 UGAAAGUAAAAGCGACACAC--UCAAACAUGCAAAUCCCGAUGGUCGCUAAUGGCGCCCA---------------------------GUGUGCUGGGCAUCUUGGCCCAUAUAGGCGCAA ..........((((((.((.--((...............))))))))))....(((((..---------------------------.((((.(((((......)))))))))))))).. ( -28.46) >DroSim_CAF1 14665 91 - 1 UGAAAGUAAAAGCGACACAC--UCAAACAUGCAAAUCCCGAUGGUCGCUAAUGGCGCCCA---------------------------GUGUGCUGGGCAUCUUGGCCCAUAUAGGCGCAA ..........((((((.((.--((...............))))))))))....(((((..---------------------------.((((.(((((......)))))))))))))).. ( -28.46) >DroEre_CAF1 19250 92 - 1 UGAAAGUAAAAGCGACACACUCUCAAACAUGCAAAUCCCGAUGGUCGCUAAUGGCGCCCA---------------------------GUGUGCCGGGCAUCUUGGC-CAUAUAGGCGCAA ..........((((((.((.((.................))))))))))....(((((..---------------------------(((.((((((...))))))-)))...))))).. ( -27.83) >DroYak_CAF1 13627 120 - 1 UGAAAGUAAAAGCGACACACUCUCCAACAUGCAAAUCCCGAUGGUCGCUAAUGGCGCCCAGUUUGCCCAGUUUGCCCACUAUGCCCAGUGUGGCGGGCAUCUUGGCCCAUAUAGGCGCAA ..........((((((.((.((.................))))))))))....(((((......(((.((..(((((.((((((...)))))).))))).)).))).......))))).. ( -38.75) >consensus UGAAAGUAAAAGCGACACACUCUCAAACAUGCAAAUCCCGAUGGUCGCUAAUGGCGCCCA___________________________GUGUGCUGGGCAUCUUGGCCCAUAUAGGCGCAA ..........((((((.((......................))))))))....(((((.............................(....).((((......)))).....))))).. (-20.99 = -21.39 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:03 2006