Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,205,066 – 4,205,186 |
Length | 120 |
Max. P | 0.817616 |
Location | 4,205,066 – 4,205,186 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 87.25 |
Mean single sequence MFE | -42.18 |
Consensus MFE | -33.72 |
Energy contribution | -33.12 |
Covariance contribution | -0.60 |
Combinations/Pair | 1.38 |
Mean z-score | -1.56 |
Structure conservation index | 0.80 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.645834 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4205066 120 + 22224390 AGGUUUCGCCGGUGCCGCUAAGCAGCAAAACGAACAGAUGAAGGCACUUGGCAUUGAGGAGCAGAGCGGCGGUGCCGCCCGAGAUGCUGGCAAGGCCAAAGAGGAGGAAAAGAAGGAGCC .((((((((((((((((((....)))....(.....).....)))))).((((((..((......(((((...)))))))..)))))))))....((.....))..........)))))) ( -39.80) >DroVir_CAF1 61842 120 + 1 CGGUUUUGCCGGCGCUGCCAAACAGCAGAACGAACAAAUGAAGGCCCUGGGCAUUGAGGAGCAAAGCGGCGGUGCCGCUCGCGAUGCCGGCAAGGCCAAAGAGGAGGAGAAAAAGGAGCC .((((((((((((((((.....)))).................(((((........))).))...((((((....))).)))...))))))))))))....................... ( -44.90) >DroGri_CAF1 47786 120 + 1 CGGCUUUGCUGGCGCCGCCAAGCAGCAGAAUGAACAAAUGAAGGCCUUGGGCAUUGAAGAGCAGAGUGGCGGUGCUGCGCGUGAUGCCGGCAAAGCCAAGGAGGAGGAGAAAAAGGAGCC .(((((((((((((.(((...((((((.((((..(((.........)))..)))).....((......))..))))))..))).)))))))))))))....................... ( -45.30) >DroWil_CAF1 43522 120 + 1 CGGUUUUGCCGGUGCGGCCAAGCAGCAGAACGAACAGAUGAAGGCUCUUGGAAUUGAGGAGCAAAGCGGCGGUGCCGCUCGUGAUGCCGGCAAGGCCAAGGAGGAGGAGAAAAAAGAGCC .((((((((((.(((......)))(((..((((..........((((((.......))))))...(((((...)))))))))..)))))))))))))....................... ( -44.90) >DroYak_CAF1 41522 120 + 1 AGGAUUCGCCGGUGCCGCUAAGCAGCAAAAUGAACAGAUGAAGGCCCUCGGCAUUGAGGAGCAGAGCGGCGGUGCCGCCCGAGAUGCUGGCAAGGCCAAAGAGGAGGAAAAGAAGGAGCC .((.(((.((....(((((....)))................((((.((((((((..((......(((((...)))))))..))))))))...)))).....)).))....)))....)) ( -36.00) >consensus CGGUUUUGCCGGUGCCGCCAAGCAGCAGAACGAACAGAUGAAGGCCCUGGGCAUUGAGGAGCAGAGCGGCGGUGCCGCCCGAGAUGCCGGCAAGGCCAAAGAGGAGGAGAAAAAGGAGCC .((((((((((((((.((...)).))....((...........((((((......)))).))...(((((...))))).))....))))))))))))....................... (-33.72 = -33.12 + -0.60)
Location | 4,205,066 – 4,205,186 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 87.25 |
Mean single sequence MFE | -37.82 |
Consensus MFE | -28.83 |
Energy contribution | -28.95 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.31 |
Mean z-score | -1.91 |
Structure conservation index | 0.76 |
SVM decision value | 0.67 |
SVM RNA-class probability | 0.817616 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4205066 120 - 22224390 GGCUCCUUCUUUUCCUCCUCUUUGGCCUUGCCAGCAUCUCGGGCGGCACCGCCGCUCUGCUCCUCAAUGCCAAGUGCCUUCAUCUGUUCGUUUUGCUGCUUAGCGGCACCGGCGAAACCU (((.................((((((.(((..((((....(((((((...)))))))))))...))).)))))).)))........((((((.((((((...))))))..)))))).... ( -37.07) >DroVir_CAF1 61842 120 - 1 GGCUCCUUUUUCUCCUCCUCUUUGGCCUUGCCGGCAUCGCGAGCGGCACCGCCGCUUUGCUCCUCAAUGCCCAGGGCCUUCAUUUGUUCGUUCUGCUGUUUGGCAGCGCCGGCAAAACCG ((.....................(((((((..(((((.(((((((((...))))).))))......))))))))))))....(((((..((.(((((....))))).))..))))).)). ( -43.00) >DroGri_CAF1 47786 120 - 1 GGCUCCUUUUUCUCCUCCUCCUUGGCUUUGCCGGCAUCACGCGCAGCACCGCCACUCUGCUCUUCAAUGCCCAAGGCCUUCAUUUGUUCAUUCUGCUGCUUGGCGGCGCCAGCAAAGCCG .......................((((((((.(((.....((...)).((((((..(.((.....((((..((((.......))))..))))..)).)..)))))).))).)))))))). ( -37.00) >DroWil_CAF1 43522 120 - 1 GGCUCUUUUUUCUCCUCCUCCUUGGCCUUGCCGGCAUCACGAGCGGCACCGCCGCUUUGCUCCUCAAUUCCAAGAGCCUUCAUCUGUUCGUUCUGCUGCUUGGCCGCACCGGCAAAACCG ((.....................((((..((.((((..(((((((((...)))))...((((...........))))..........))))..))))))..))))((....))....)). ( -34.90) >DroYak_CAF1 41522 120 - 1 GGCUCCUUCUUUUCCUCCUCUUUGGCCUUGCCAGCAUCUCGGGCGGCACCGCCGCUCUGCUCCUCAAUGCCGAGGGCCUUCAUCUGUUCAUUUUGCUGCUUAGCGGCACCGGCGAAUCCU ((((...................))))(((((((((....(((((((...))))))).((.((((......)))))).......)))).....((((((...))))))..)))))..... ( -37.11) >consensus GGCUCCUUUUUCUCCUCCUCUUUGGCCUUGCCGGCAUCACGAGCGGCACCGCCGCUCUGCUCCUCAAUGCCAAGGGCCUUCAUCUGUUCGUUCUGCUGCUUGGCGGCACCGGCAAAACCG (((((................(((((.(((..((((....(((((((...)))))))))))...))).))))))))))......((((.((.(((((....))))).)).))))...... (-28.83 = -28.95 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:24 2006