Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,203,255 – 4,203,355 |
Length | 100 |
Max. P | 0.992120 |
Location | 4,203,255 – 4,203,355 |
---|---|
Length | 100 |
Sequences | 4 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 75.70 |
Mean single sequence MFE | -28.65 |
Consensus MFE | -17.26 |
Energy contribution | -17.20 |
Covariance contribution | -0.06 |
Combinations/Pair | 1.14 |
Mean z-score | -2.46 |
Structure conservation index | 0.60 |
SVM decision value | 2.31 |
SVM RNA-class probability | 0.992120 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4203255 100 + 22224390 CAAG-------------UGCAUCUGAUGUGCACACUCCGUUUGGGAAUA------UGGCUGCAUUGUUUGGAAACUUUGCGGUGGUAAACAAAUUACAUGGAAAUUUGUACUAAUUAUA ...(-------------(((((.....))))))..(((.....))).((------(.((((((..(((....)))..)))))).))).(((((((.......))))))).......... ( -25.70) >DroSec_CAF1 37227 100 + 1 CAAG-------------UGCAUCUAAUAUGCACAGUCCGUUUGGGAAUA------CGACUGCAUUGUUUGGAAACUUUGCGGUGGUAAACAAAUUACAUGCAGAUUUGUACAAACUAUA ...(-------------(((((.....)))))).....(((((....((------(.((((((..(((....)))..)))))).))).(((((((.......))))))).))))).... ( -29.60) >DroEre_CAF1 36973 113 + 1 CAAGUAAAUCGGCUUCGUGCAUCUUAUGUGCACAGUCCGUUUGGGAAUA------UGACUGCAUUGUUUAGAAACUUUGCAGUGGUAAACAAAUUACCCACCAAANNNNNNNNNNNNNN .........(((((..((((((.....)))))))).)))(((((.....------..((((((..(((....)))..))))))(((((.....)))))..))))).............. ( -27.90) >DroYak_CAF1 39650 119 + 1 CAAGUAAAUCGGGUUCGUGCAUCUAAUGUGCACAGUCCGUUUGGGAAUAUGAGUAUGACUGCAUUGUUUAGAAACAUUGCGGUGGUAAACAAAUUACAUACAAAUUUGUACUAAUUAUA ..((((....((..(.((((((.....)))))))..))((.((..(((.((..(((.((((((.((((....)))).)))))).)))..)).))).)).)).......))))....... ( -31.40) >consensus CAAG_____________UGCAUCUAAUGUGCACAGUCCGUUUGGGAAUA______UGACUGCAUUGUUUAGAAACUUUGCGGUGGUAAACAAAUUACAUACAAAUUUGUACUAAUUAUA ................((((((.....))))))..(((.....)))...........((((((..(((....)))..)))))).((((.....))))...................... (-17.26 = -17.20 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:21 2006