Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,195,895 – 4,195,993 |
Length | 98 |
Max. P | 0.994096 |
Location | 4,195,895 – 4,195,993 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 88.04 |
Mean single sequence MFE | -29.54 |
Consensus MFE | -23.88 |
Energy contribution | -24.04 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.05 |
Mean z-score | -2.71 |
Structure conservation index | 0.81 |
SVM decision value | 2.45 |
SVM RNA-class probability | 0.994096 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4195895 98 + 22224390 UAUAUGUUCCAUA-------UACCAGGGUGUAUAUAUAUAAGGUUGGAGGCAGAAUGAUAGAGUGACGUAUUUGUUUGUUUGUCUGUCGUCGUCUCCUAAAUGAA (((((((...(((-------(((....))))))))))))).....((((((.((.(((((((..((((........))))..)))))))))))))))........ ( -28.10) >DroSec_CAF1 29014 92 + 1 UAUAUG--CCAUA-------UACCGGGGUGUAU----AUAAGGUGGGAGGCGGACUGAUAGAGUGACGUAUUUGUUUGUUUGUCUGUCGUCGUCUCCUAAAUGAA ((((((--((...-------......)))))))----).....(((((((((.((.((((((..((((........))))..)))))))))))))))))...... ( -30.40) >DroSim_CAF1 17653 92 + 1 UAUAUG--CCAUA-------UACCGGGGUGUAU----AUAAGGUGGGAGGCGGACUGAUAGAGUGACGUAUUUGUUUGUUUGUCUGUCGUCGUCUCCUAAAUGAA ((((((--((...-------......)))))))----).....(((((((((.((.((((((..((((........))))..)))))))))))))))))...... ( -30.40) >DroEre_CAF1 29659 90 + 1 --UAUG--CCAUU-------UACCAGGGAGUAU----AUAAGGUGGGAGGCGGACUGAUAGAGUGACGUAUUUGUUUGUUUGUCUGUCGCCGUCUCCUAAAUGAA --....--.((((-------(....(((((...----....(((((.((((((((.((((((........)))))).)))))))).)))))..)))))))))).. ( -29.20) >DroYak_CAF1 32428 95 + 1 --UAUG--CCAUUUACCAUUUACCAGGGAGUAC----AUAAGGUGGGAGGCGGACUGAUAGAAUGACGUAU--GUUUGUUUGUCUGUCGCCGUCUCCUAAAUGAA --....--.((((((.....((((..(.....)----....))))((((((((...((((((..((((...--...))))..)))))).)))))))))))))).. ( -29.60) >consensus UAUAUG__CCAUA_______UACCAGGGUGUAU____AUAAGGUGGGAGGCGGACUGAUAGAGUGACGUAUUUGUUUGUUUGUCUGUCGUCGUCUCCUAAAUGAA ...........................................((((((((((...((((((..((((........))))..)))))).))))))))))...... (-23.88 = -24.04 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:20 2006