Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,171,159 – 4,171,259 |
Length | 100 |
Max. P | 0.617935 |
Location | 4,171,159 – 4,171,259 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 90.21 |
Mean single sequence MFE | -18.94 |
Consensus MFE | -13.36 |
Energy contribution | -13.84 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.08 |
Mean z-score | -2.09 |
Structure conservation index | 0.71 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.617935 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4171159 100 - 22224390 UUACUGCAUACAAGACCAUAAAUUGUUACCAAGCAAUUUCCAUAUGAGAGAUAACAAUACAUAUUUCCGGAACUGGGAAUAU---GCAUAUGCACUAUCUAUU ....((((((......(((((((((((....)))))))....)))).............((((((((((....)))))))))---)..))))))......... ( -20.50) >DroSec_CAF1 3982 103 - 1 UUACUGCAUACAAGACCAUAAAUUGUUACCAAGCAAUUUCCAUAUGAGAGAUAACAAUACAUAUUUCCGGAACUGGGAAUAUUGUACAUAUGCACUAUCUAUU ....((((((......(((((((((((....)))))))....))))...........((((((((((((....)))))))).))))..))))))......... ( -19.60) >DroSim_CAF1 4014 103 - 1 UUACUGCAUACAAGACCAUAAAUUGUUACCAAGCAAUUUCCAUAUGAGAGAUAACCAUACAUAUUUCCGGAACUGGGAAUAUUGUACAUAUGCACUAUCUAUU ....((((((......(((((((((((....)))))))....))))...........((((((((((((....)))))))).))))..))))))......... ( -19.60) >DroEre_CAF1 3845 92 - 1 UUACUGCAUACAAGACCAUAAAUUGUUACCAAGCAAUUUCCAUAUGAGAGAUAACAA----UAUUUCCGGAACUGGAAAU-------AUAUUCGUUAUCAAUU ................(((((((((((....)))))))....))))...((((((.(----((((((((....)))))))-------))....)))))).... ( -18.00) >DroYak_CAF1 3853 98 - 1 UUACUGCAUACAAGACCAUAAAUUGUUACCAAGCAAUUUCCAUAUGAGAGAUAACAA----UAUUUCCGGAACUGGGAAUAC-GAGUAUACUCACUAUCUAUU ................(((((((((((....)))))))....))))..(((((....----((((((((....)))))))).-(((....)))..)))))... ( -17.00) >consensus UUACUGCAUACAAGACCAUAAAUUGUUACCAAGCAAUUUCCAUAUGAGAGAUAACAAUACAUAUUUCCGGAACUGGGAAUAU_G_ACAUAUGCACUAUCUAUU ....((((((......(((((((((((....)))))))....))))...............((((((((....)))))))).......))))))......... (-13.36 = -13.84 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:06 2006