Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,169,892 – 4,169,986 |
Length | 94 |
Max. P | 0.861413 |
Location | 4,169,892 – 4,169,986 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 97.02 |
Mean single sequence MFE | -15.40 |
Consensus MFE | -13.92 |
Energy contribution | -13.88 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.06 |
Mean z-score | -1.46 |
Structure conservation index | 0.90 |
SVM decision value | 0.83 |
SVM RNA-class probability | 0.861413 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4169892 94 + 22224390 CCUGGGAUUGUGCAAUAAAGCUAUAAUAAUAAAAUAACAAACAAACCGUUAAAGCGAACGCCGUCGCACACUCAUCGCACCCACACAAACGCAC ..(((((((((((......)).)))))..........................((((......))))............))))........... ( -13.60) >DroSec_CAF1 2681 94 + 1 CCCGGGAUUGUGCAAUAAAGCUAUAAUAAUAAAAUAACAAACAAACCGUUAAGGCGAACGCCGUCGCACACUCAUCGCACCAACACAAACGCAC ..(((((.(((((.....................((((.........)))).(((....)))...))))).)).)))................. ( -15.90) >DroSim_CAF1 2720 94 + 1 CCCGGGAUUGUGCAAUAAAGCUAUAAUAAUAAAAUAACAAACAAACCGUUAAGGCGAACGCCGUCGCACACUCAUCGCACCAACACAAACGCAC ..(((((.(((((.....................((((.........)))).(((....)))...))))).)).)))................. ( -15.90) >DroEre_CAF1 2576 94 + 1 CAUGGGAUUGUGCAAUAAAGCUAUAAUAAUAAAAUAACAAACAAACCGUUAAGGCGAACGCCGUCGCACACUCAUCGCACCAACACAAGCUCAC .(((((..(((((.....................((((.........)))).(((....)))...))))))))))................... ( -15.70) >DroYak_CAF1 2660 94 + 1 CAUGGGAUUGUGCAAUAAAGCUAUAAUAAUAAAAUAACAAACAAACCGUUAAGGCGAACGCCGUCGCACACUCAUCGCACCAACACAAACGCAC .(((((..(((((.....................((((.........)))).(((....)))...)))))))))).((............)).. ( -15.90) >consensus CCUGGGAUUGUGCAAUAAAGCUAUAAUAAUAAAAUAACAAACAAACCGUUAAGGCGAACGCCGUCGCACACUCAUCGCACCAACACAAACGCAC ..(((((.(((((.....................((((.........)))).(((....)))...))))).)).)))................. (-13.92 = -13.88 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:05 2006