Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,156,115 – 4,156,235 |
Length | 120 |
Max. P | 0.860005 |
Location | 4,156,115 – 4,156,235 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 75.00 |
Mean single sequence MFE | -39.47 |
Consensus MFE | -19.71 |
Energy contribution | -21.73 |
Covariance contribution | 2.02 |
Combinations/Pair | 1.25 |
Mean z-score | -2.59 |
Structure conservation index | 0.50 |
SVM decision value | 0.82 |
SVM RNA-class probability | 0.860005 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4156115 120 - 22224390 ACCUAUAUACAUGCCGUUCCAAAUUGGGCUGUCAGUCGCCUGUAAUUGUAUGGGUCCGAUUGCACAGGGAGAAAUCUUGGUCAGUCUGCCAUUUGAUGGAGCAUCAAGUGGUGUAAAUGC (((((((((..(((...........((((........)))))))..)))))))))..(((((.((..(((....)))..))))))).(((((((((((...)))))))))))........ ( -36.50) >DroSim_CAF1 14216 116 - 1 ACCU----ACAUGCAGCCCCAAAUUGGGCUGUCAGUUGUCUGUAAUUGUGUGGGUUCGACUGCACAGGCAGAAAUCUUGGGCAGUCUGCCAUUUGAUGGAACAUCAAGUGGUGUACUUGC ((((----(((((((((((......)))))))(((....))).....))))))))..((((((.((((.(....))))).)))))).(((((((((((...)))))))))))........ ( -49.80) >DroYak_CAF1 39955 106 - 1 ACCU----AUAUACAGCCCCAAAUUGGGCUGUCAGUUAUCCGUAAUUGUGUGAGUCUGGCUGCACGGUGAGAAAUCUUG--CAGGUUUUCA---GAUUGAAUAUGAAG-----GAAUUGG ....----....(((((((......)))))))((((..(((....(..(((.(((((((..((...(..((....))..--)..))..)))---))))..)))..).)-----)))))). ( -32.10) >consensus ACCU____ACAUGCAGCCCCAAAUUGGGCUGUCAGUUGUCUGUAAUUGUGUGGGUCCGACUGCACAGGGAGAAAUCUUGG_CAGUCUGCCAUUUGAUGGAACAUCAAGUGGUGUAAUUGC .........((((((((((......)))))))((((((....)))))).))).....(((((..((((.(....)))))..))))).((((((((((.....))))))))))........ (-19.71 = -21.73 + 2.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:00 2006