Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,155,319 – 4,155,425 |
Length | 106 |
Max. P | 0.500000 |
Location | 4,155,319 – 4,155,425 |
---|---|
Length | 106 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 80.35 |
Mean single sequence MFE | -30.85 |
Consensus MFE | -26.04 |
Energy contribution | -25.27 |
Covariance contribution | -0.77 |
Combinations/Pair | 1.19 |
Mean z-score | -1.00 |
Structure conservation index | 0.84 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4155319 106 - 22224390 --CACUUUGCAUCUCGCCGUCUUCAUUA-GGAGAAAAACGCAAACUAAGUGAGUAAUAUGAGCCUUAGGAGGCGUGUGAAGUGCACACUUGAUUUAGAGCGUGGGUGGG----------- --..........((((((.(((((....-)))))...((((...((((((((((.......((((....))))((((.....)))))))).)))))).)))).))))))----------- ( -32.00) >DroSim_CAF1 13435 108 - 1 CCCACUUUGCAUCCCAUCGUCUUCAUUA-GGAGAAAAACGCAAACUAAGUGAGUAAUAUGAGCCUUAGGAGGCGUGUGAAGUGCACACUUGAUUUAGAGCGUGGGUGGU----------- ((((((((((.........(((((....-))))).....)))))((((((((((.......((((....))))((((.....)))))))).))))))...)))))....----------- ( -30.64) >DroYak_CAF1 39158 111 - 1 --C-------AGACCAUCGCCUUCACUAAUGAGAAUAACGCAUACUAAGUGAGUAAUAGGAGGCUUAGGAGGCGUGUGAAGUGCACACUUGAUUUAGAGCGUGGGUGGUAGUUGUUGGGG --.-------..((((((((((((((...........((((...((((((............))))))...)))))))))).))((.(((......))).)).))))))........... ( -29.90) >consensus __CACUUUGCAUCCCAUCGUCUUCAUUA_GGAGAAAAACGCAAACUAAGUGAGUAAUAUGAGCCUUAGGAGGCGUGUGAAGUGCACACUUGAUUUAGAGCGUGGGUGGU___________ ............((((((..((((((...........((((...(((((..............)))))...))))))))))..(((.(((......))).)))))))))........... (-26.04 = -25.27 + -0.77)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:59 2006