Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 527,054 – 527,150 |
Length | 96 |
Max. P | 0.843343 |
Location | 527,054 – 527,150 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.19 |
Mean single sequence MFE | -23.89 |
Consensus MFE | -18.62 |
Energy contribution | -19.70 |
Covariance contribution | 1.08 |
Combinations/Pair | 1.10 |
Mean z-score | -1.82 |
Structure conservation index | 0.78 |
SVM decision value | 0.76 |
SVM RNA-class probability | 0.843343 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 527054 96 + 22224390 CAGCCCCCUAGUUUUGCGCCCAGUUUUUCCUCUCUUUUUCACCGCUUAUCCGCU------------------------UGCCCAGUGCAAUUUAAUUAUGCAGAACUCACCACAGGGGGC ..((((((((((((((((.........................((......))(------------------------(((.....))))........)))))))))......))))))) ( -25.90) >DroSec_CAF1 13632 100 + 1 CAGCCCCCUAGUUUUGCGCCCAGUUUUUCCUCUCUUUUUCACCGCUUAUCCGCU--------------------UGCUUGCCCAGUGCAAUUUAAUUAUGCAGAACUCGACACAGGGGGC ..((((((((((((((((.........................((......))(--------------------(((.........))))........)))))))))......))))))) ( -26.30) >DroSim_CAF1 13948 96 + 1 CAGCCCCCUAGUUUUGCGCCCAGUUUUUCCUCUCUUUUUCACCGCUUAUCCGCU------------------------UGCCCAGUGCAAUUUAAUUAUGCAGAACUCGCCACAGGGGGC ..((((((((((((((((.........................((......))(------------------------(((.....))))........)))))))))......))))))) ( -25.90) >DroEre_CAF1 18527 102 + 1 CAGCCCCCUAGUU-UGCGCCCACUUUUUCCUCUCAUUUCCGCCGCUUACCCC-----------------UUGCCCGCUUGCCUAGUGCAAUUUAAUUAUGCAGACCUCGCCGCAGGAGGU ..(((.(((.((.-.(((......................((.((.......-----------------..))..))((((.((((........)))).))))....))).))))).))) ( -16.10) >DroYak_CAF1 12883 119 + 1 CAGCCCCCUAGUU-UGCGGCCACUUUUUUCUCUCUUUUCCACCGCUUACCCGCUUUCCCGAUUUCCCGAUUUCCCGCUUUUCCAGUGCAAUUUAAUUAUGCAGAACUCGCCACAGGGGGC ..(((((((.((.-.((((......................))))..)).........(((.(((.((......)).........((((.........))))))).)))....))))))) ( -25.25) >consensus CAGCCCCCUAGUUUUGCGCCCAGUUUUUCCUCUCUUUUUCACCGCUUAUCCGCU_____________________GCUUGCCCAGUGCAAUUUAAUUAUGCAGAACUCGCCACAGGGGGC ..((((((((((((((((.........................((......)).........................(((.....))).........)))))))))......))))))) (-18.62 = -19.70 + 1.08)
Location | 527,054 – 527,150 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 81.19 |
Mean single sequence MFE | -29.60 |
Consensus MFE | -21.08 |
Energy contribution | -22.24 |
Covariance contribution | 1.16 |
Combinations/Pair | 1.14 |
Mean z-score | -1.55 |
Structure conservation index | 0.71 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.570883 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 527054 96 - 22224390 GCCCCCUGUGGUGAGUUCUGCAUAAUUAAAUUGCACUGGGCA------------------------AGCGGAUAAGCGGUGAAAAAGAGAGGAAAAACUGGGCGCAAAACUAGGGGGCUG (((((((((..((.((((((((.........))))((...((------------------------.((......))..))....))............)))).))..)).))))))).. ( -29.20) >DroSec_CAF1 13632 100 - 1 GCCCCCUGUGUCGAGUUCUGCAUAAUUAAAUUGCACUGGGCAAGCA--------------------AGCGGAUAAGCGGUGAAAAAGAGAGGAAAAACUGGGCGCAAAACUAGGGGGCUG ((((((((((((.((((((.(.........((((.....)))).((--------------------.((......))..)).......).)))...))).)))))......))))))).. ( -29.90) >DroSim_CAF1 13948 96 - 1 GCCCCCUGUGGCGAGUUCUGCAUAAUUAAAUUGCACUGGGCA------------------------AGCGGAUAAGCGGUGAAAAAGAGAGGAAAAACUGGGCGCAAAACUAGGGGGCUG (((((((((.(((...(((((.........((((.....)))------------------------))))))....((((................))))..)))...)).))))))).. ( -29.79) >DroEre_CAF1 18527 102 - 1 ACCUCCUGCGGCGAGGUCUGCAUAAUUAAAUUGCACUAGGCAAGCGGGCAA-----------------GGGGUAAGCGGCGGAAAUGAGAGGAAAAAGUGGGCGCA-AACUAGGGGGCUG .(((((((..(((...(((((.........((((.....))))((..((..-----------------...))..)).)))))..(....)...........))).-...)))))))... ( -25.70) >DroYak_CAF1 12883 119 - 1 GCCCCCUGUGGCGAGUUCUGCAUAAUUAAAUUGCACUGGAAAAGCGGGAAAUCGGGAAAUCGGGAAAGCGGGUAAGCGGUGGAAAAGAGAGAAAAAAGUGGCCGCA-AACUAGGGGGCUG (((((((....((..(((((((.........))))((((.....(((....))).....)))))))..))(((..(((((.(................).))))).-.)))))))))).. ( -33.39) >consensus GCCCCCUGUGGCGAGUUCUGCAUAAUUAAAUUGCACUGGGCAAGC_____________________AGCGGAUAAGCGGUGAAAAAGAGAGGAAAAACUGGGCGCAAAACUAGGGGGCUG (((((((((.(((.((((((((.........))))..))))..........................((......)).........................)))...)).))))))).. (-21.08 = -22.24 + 1.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:58 2006