Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,117,201 – 4,117,321 |
Length | 120 |
Max. P | 0.911026 |
Location | 4,117,201 – 4,117,321 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 77.86 |
Mean single sequence MFE | -30.48 |
Consensus MFE | -21.55 |
Energy contribution | -22.30 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.06 |
Mean z-score | -1.91 |
Structure conservation index | 0.71 |
SVM decision value | 1.07 |
SVM RNA-class probability | 0.911026 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4117201 120 - 22224390 GUUCUACUUUCAUUCCGGUCGAGGCCAGCUGCGUGGCAGAGUCGUUGACUUUCCUCUCCUCUCGACUCGAGGGAAUUGCCCAUUUGGCUAUUUUUUAGCCAAAUUGUAGAUACUUUACAA (((((((......((.(((((((((((......))))((((((...))))))........))))))).))(((.....)))(((((((((.....))))))))).))))).))....... ( -39.70) >DroSec_CAF1 8332 109 - 1 GUUCCACUUUCAUUCCGGUCGAGGCCAGCUGCAUGGCAGAGUCGUUGCCUUUCCUCUCC--UCGACUCGAGGGAAUUGCCCAUUUGGCUAUUUUUUAGCUAAAUUGUAGAU--------- ........(((.(((.((((((((..((......(((((.....)))))....))..))--)))))).))).)))((((..(((((((((.....))))))))).))))..--------- ( -32.80) >DroSim_CAF1 3736 109 - 1 GUUCCACUUUCAUUCCGGUCGAGGCCAGCUGCAUGGCAGAGUCGUUGACUUUCCUCUCC--UCGACUCGAGGGAAUUGCCCAUUUGGCUAUUUUUUAGCUAAAUUGUAGAU--------- ........(((.(((.(((((((((((......))))((((((...))))))......)--)))))).))).)))((((..(((((((((.....))))))))).))))..--------- ( -34.00) >DroYak_CAF1 3857 97 - 1 CUUUU-----------------------CUGCGACGCAGAGUCGUUGACUUUCCUCUUCUCUCUACUCGAUGGAAUUGCCCAUUUGACUAUUUUCUAGCUAAAUUGUAGAUAUUUUUCGA ....(-----------------------(.(((((.....))))).)).............((((((((((((......))).))))(((.....))).......))))).......... ( -15.40) >consensus GUUCCACUUUCAUUCCGGUCGAGGCCAGCUGCAUGGCAGAGUCGUUGACUUUCCUCUCC__UCGACUCGAGGGAAUUGCCCAUUUGGCUAUUUUUUAGCUAAAUUGUAGAU_________ ................(((....)))..(((((.(((((((((...))))((((((............)))))).))))).(((((((((.....))))))))))))))........... (-21.55 = -22.30 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:48 2006