Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,116,979 – 4,117,099 |
Length | 120 |
Max. P | 0.612367 |
Location | 4,116,979 – 4,117,099 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 87.68 |
Mean single sequence MFE | -41.35 |
Consensus MFE | -33.28 |
Energy contribution | -35.65 |
Covariance contribution | 2.37 |
Combinations/Pair | 1.05 |
Mean z-score | -1.50 |
Structure conservation index | 0.80 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.612367 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4116979 120 - 22224390 AUUCUUUCGGUUGCUUUUUGCUAUCUAUGGUUGGCAGCACAGAGCCGCUUCUCUUCUCGAGAAGGAGGCAGUUCAGGACUCAAAGGAGCAGUGCGUCGCCAUGCUGAUUACCAGGCCAUA ........(((.((.....)).)))((((((((((.((((.((((.(((((.((((....))))))))).))))..(.(((....)))).))))...))))..(((.....))))))))) ( -40.60) >DroSec_CAF1 8103 118 - 1 GUACUUUCGGUUGCUUUUUGCGAUCUAUGGUUGGCAGCACAGAGCCGCUUCGCUU--CGAGAAGGAGGCAGUUCAGGGCUCAAAGGAGCAGUGCGUCGCCAUGCUGAUUACCAGGCCAUA ........((((((.....))))))((((((((((.((((.((((.(((((.(((--....)))))))).))))...((((....)))).))))...))))..(((.....))))))))) ( -45.30) >DroSim_CAF1 3503 118 - 1 GUACUCUCGGUUGCUUUUUGCGAUCUAUGGUUGGCAGCACAGAGCCGCUUCGCUU--CAAGAAGGAGGCAGUUCAGGGCUCAAAGGAGCAGUGCGUCGCCAUGCUGAUUACCAGGCCAUA ........((((((.....))))))((((((((((.((((.((((.(((((.(((--....)))))))).))))...((((....)))).))))...))))..(((.....))))))))) ( -45.30) >DroYak_CAF1 3646 104 - 1 --------------CUUUUGCGAUCUUUAGUUGCCAGCACAGAACCGCUUCUCUU--GGAGAAGGAGGCAGUUCAGGGCUCAAAGGAGCAGUGCGUCGCCAUGCUGAUUACCAGGCCGUA --------------....((((..(((((((.((..((((.((((.(((((.(((--....)))))))).))))...((((....)))).))))...))...))))).....))..)))) ( -34.20) >consensus GUACUUUCGGUUGCUUUUUGCGAUCUAUGGUUGGCAGCACAGAGCCGCUUCGCUU__CGAGAAGGAGGCAGUUCAGGGCUCAAAGGAGCAGUGCGUCGCCAUGCUGAUUACCAGGCCAUA ........((((((.....))))))((((((((((.((((.((((.(((((.(((......)))))))).))))...((((....)))).))))...))))..(((.....))))))))) (-33.28 = -35.65 + 2.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:47 2006