Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,115,832 – 4,115,952 |
Length | 120 |
Max. P | 0.984407 |
Location | 4,115,832 – 4,115,952 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.11 |
Mean single sequence MFE | -46.60 |
Consensus MFE | -44.05 |
Energy contribution | -44.55 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -2.77 |
Structure conservation index | 0.95 |
SVM decision value | 1.97 |
SVM RNA-class probability | 0.984407 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4115832 120 - 22224390 GCGGGGCUCGUCGGCGGCACAGAACUCGGGGCUCUGGGUUGUGCAACGCACAGGACUACAUGCUCACAGCCUCGAGUGCUGUGCAAGCUUAAUUAUAAAAUGUAUGAAGCAGAAGGAUAU ((.(((((((....))((((((.((((((((((.((((((((((...)))))(.....)..))))).)))))))))).)))))).)))))..(((((.....))))).)).......... ( -45.80) >DroSec_CAF1 7188 120 - 1 GCAGGGCUCGUCGGCAGCACAGGACUCGGGGCUCUGGGUUGUGCAACGCACAGGACUACAUGCUCACAGCCUCGAGUGCUGUGCAAGCUUAAUUAUAAAAUGUAUGAAGCAGAAGGAUAC .....(((....))).((((((.((((((((((.((((((((((...)))))(.....)..))))).)))))))))).))))))..((((...(((.....)))..)))).......... ( -47.00) >DroSim_CAF1 2568 120 - 1 GCAGGGCUCGUCGGCAGCACAGGACUCGGGGCUCUGGGUUGUGCAACGCACAGGACUACAUGCUCACAGCCUCGAGUGCUGUGCAAGCUUAAUUAUAAAAUGUAUGAAGCAGAAGGAUAC .....(((....))).((((((.((((((((((.((((((((((...)))))(.....)..))))).)))))))))).))))))..((((...(((.....)))..)))).......... ( -47.00) >DroYak_CAF1 2501 120 - 1 GCAGGGCUGGUCGGCGGCACAGGACUCGGGGCUCUGGGUUGUGCAACUCACAGGACUACAUGCUCACAGCCGCGAGUGCUGUGCAAGCUUAAUUAUAAAAUGUAUGAAGCCGAAGAAUAC ..........(((((.((((((.(((((.((((.(((((((((...(.....)...)))).))))).)))).))))).))))))........(((((.....))))).)))))....... ( -46.60) >consensus GCAGGGCUCGUCGGCAGCACAGGACUCGGGGCUCUGGGUUGUGCAACGCACAGGACUACAUGCUCACAGCCUCGAGUGCUGUGCAAGCUUAAUUAUAAAAUGUAUGAAGCAGAAGGAUAC .....(((....))).((((((.((((((((((.((((((((((...)))))(.....)..))))).)))))))))).))))))..((((...(((.....)))..)))).......... (-44.05 = -44.55 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:46 2006