Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,100,451 – 4,100,558 |
Length | 107 |
Max. P | 0.975228 |
Location | 4,100,451 – 4,100,558 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 89.26 |
Mean single sequence MFE | -28.33 |
Consensus MFE | -24.02 |
Energy contribution | -23.50 |
Covariance contribution | -0.52 |
Combinations/Pair | 1.19 |
Mean z-score | -2.01 |
Structure conservation index | 0.85 |
SVM decision value | 1.75 |
SVM RNA-class probability | 0.975228 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4100451 107 - 22224390 UUGGCCCAGACGGGCCAUCAGUUUUGCACACCCCCAUCCAGUGAACACAUUUCCCAGGGCUGGGAAAACAGCCCAUUUCAUUGGCAUAUUUAU--UUUUUUCCCAUUGG .((((((....))))))....................((((((......(((((((....)))))))...(((.........)))........--........)))))) ( -30.10) >DroSec_CAF1 112228 106 - 1 UUCGCCCAGACGGGCCAUCAGUUUUCCACACCCCCAUCCAGUGAGCACAUUUCCCAGGGCUGACAAAACAGUCCAUUUCAUUGGCAUAUUUAU--UU-UUUCCCAUUGG ...((((....))))......................((((((((...........((((((......))))))..)))))))).........--..-........... ( -20.72) >DroSim_CAF1 113889 106 - 1 UUGGCCCAGACGGGCCAUCAGUUUUGCACACCCCCAUCCACUGAGCACAUUUUCCAGGGCUGGCAAAACAGCCCAUUUCAUUGGCAUAUUUAU--UU-UUUCCCAUUGG .((((((....))))))(((((..((........))...)))))((.((.......((((((......)))))).......))))........--..-........... ( -30.44) >DroEre_CAF1 118567 101 - 1 UUGGCCCAGACGGGCCAUCAGUUUUGCACACCCCCAUCCGCUGAACACAUUUGCCAGGGCUGGGA-AACAGCCCAUUUCAUUGGCAUAUU------U-UUUUCCACUGG .((((((....))))))(((((..((........))...))))).......(((((((((((...-..)))))).......)))))....------.-........... ( -32.61) >DroYak_CAF1 111870 107 - 1 UUGGCCCAGACGGGCCAUCAGUUUUGCACACCCACAUACACAAAACACGUUUUCCAGGGCUGGGA-AACAGCCCAUUUCAUUGGCAUAUUUCUCUUU-UUUCCCGUUGG .((((((....))))))...((((((..............))))))..........((((((...-..))))))....((.(((.............-....))).)). ( -27.77) >consensus UUGGCCCAGACGGGCCAUCAGUUUUGCACACCCCCAUCCACUGAACACAUUUCCCAGGGCUGGGAAAACAGCCCAUUUCAUUGGCAUAUUUAU__UU_UUUCCCAUUGG .((((((....))))))...((((..................))))..........((((((......))))))....((.(((..................))).)). (-24.02 = -23.50 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:31 2006