Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,100,305 – 4,100,397 |
Length | 92 |
Max. P | 0.887082 |
Location | 4,100,305 – 4,100,397 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 81.00 |
Mean single sequence MFE | -14.95 |
Consensus MFE | -8.02 |
Energy contribution | -7.90 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.12 |
Mean z-score | -2.72 |
Structure conservation index | 0.54 |
SVM decision value | 0.94 |
SVM RNA-class probability | 0.887082 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4100305 92 + 22224390 AAUGGGGUAAAUCCUACGAAAAA-AAAAAAA-----ACAAACUUUUGGGGCAACUUUUUUUGGUCAAACAAAAAAAAACAAAAGAACAGUAGCGAAAA ..(((((....))))).......-.......-----.....((((((((....))(((((((......)))))))...)))))).............. ( -14.10) >DroSec_CAF1 112080 94 + 1 AAUGGGGUAAGUCCUACGAAAAA-AAAAAUAAAGGCACAAACUUUUGGGCCAACUUUUUUUGGUCAAACAAA---AAAGAAAAGAACAGUAACGAAAA ..(((((....)))))((.....-.........(((.(((....))).)))...((((((((......))))---)))).............)).... ( -14.50) >DroSim_CAF1 113739 96 + 1 AAUGGGGUAAAUCCUACGAAAAAAAAAAAUAAAGGCACAAACUUUUGGGCCAACUUUUUUUGGUCAAACAAAA--AAAGAAAAGAACAGUAACGAAAA ..(((((....)))))((...............(((.(((....))).)))..(((((((((......)))))--)))).............)).... ( -18.00) >DroYak_CAF1 111749 78 + 1 AAUGGGGUAAAUCCUACGAAAAA-----AUAAAGGCACAAACUUUUGGGCCAAUUUUUUUUGGUUGAAAAAAA---------------AUAAUGAAAA ..(((((....)))))(((((((-----(....(((.(((....))).)))...))))))))...........---------------.......... ( -13.20) >consensus AAUGGGGUAAAUCCUACGAAAAA_AAAAAUAAAGGCACAAACUUUUGGGCCAACUUUUUUUGGUCAAACAAAA__AAAGAAAAGAACAGUAACGAAAA ..(((((....)))))((...................(((....)))((((((......))))))...........................)).... ( -8.02 = -7.90 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:30 2006