Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,092,786 – 4,092,930 |
Length | 144 |
Max. P | 0.693422 |
Location | 4,092,786 – 4,092,895 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 82.06 |
Mean single sequence MFE | -38.44 |
Consensus MFE | -26.36 |
Energy contribution | -27.92 |
Covariance contribution | 1.56 |
Combinations/Pair | 1.25 |
Mean z-score | -1.78 |
Structure conservation index | 0.69 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.693422 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4092786 109 + 22224390 CUAACUGGAGGAGUAGCUGGCUCUGCUCUGCCUCAGCUGACUGGUUCUCUUGGCCAGUCAGGACCUUUGGGAUUGGCCCAAGGACCACUUUCUGGACUUACCGGUUAAU .(((((((.(((((((......)))))))...((((((((((((((.....))))))))))...(((((((.....)))))))........)))).....))))))).. ( -43.00) >DroSec_CAF1 104536 109 + 1 CUAACUGGAGGACUAGCUGGCUCCGCUCUGCCUCAGCUGACUGGUUCUCUUGGCCAGUCAGGACCUUUGGGAUUGGCCCAAGGACCACUUUCCGGACUUACCGGUUAAU .((((((((((.(((((((((........)))..))))((((((((.....)))))))).((.((((.(((.....))))))).)).......)).))).))))))).. ( -40.00) >DroSim_CAF1 105567 109 + 1 CUAACUGGAGGAGUAGCUGGCUCCGCUCUGCCUCAGCUGACUGGUUCUCUUGGCCAGUCAGGACCUUUGGGAUUGGGCCAAGGACCACUUUCCGGACUUACCGGUUAAU .(((((((.(((((.....)))))..((((((.(((((((((((((.....))))))))))..((....)).))))))...(((......))))))....))))))).. ( -40.40) >DroEre_CAF1 110920 106 + 1 CUAACUGCAGGAGCAGCUAAUUCCGCUGUUCCUCAACUGAGUAGUGUUCUUGGCCAGUCAGGACCUUUGGGAUUGGCUCAAGGA---CUUGGAGGACUUUCCGGUUAAU ...(((((.((((((((.......))))))))((....)))))))((((((((((((((...........))))))).))))))---)((((((....))))))..... ( -39.50) >DroYak_CAF1 103914 100 + 1 GGUGCUGGAGGAAUAGCUAGUUCCCUUCCUGCUCAAUUGACUAGUGCUCUUGGCCAGCCAGGACCUUU------GGCUCAAGGA---CUUGGAGGAAUUACCGGAUAAU ....((((.(((((.....)))))(((((...((..((((((((.(.((((((....)))))).).))------)).)))).))---...))))).....))))..... ( -29.30) >consensus CUAACUGGAGGAGUAGCUGGCUCCGCUCUGCCUCAGCUGACUGGUUCUCUUGGCCAGUCAGGACCUUUGGGAUUGGCCCAAGGACCACUUUCAGGACUUACCGGUUAAU .(((((((.(((((.....)))))..((((......(((((((((.......)))))))))...(((((((.....))))))).........))))....))))))).. (-26.36 = -27.92 + 1.56)
Location | 4,092,821 – 4,092,930 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 84.08 |
Mean single sequence MFE | -33.75 |
Consensus MFE | -21.14 |
Energy contribution | -23.14 |
Covariance contribution | 2.00 |
Combinations/Pair | 1.17 |
Mean z-score | -1.82 |
Structure conservation index | 0.63 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.516102 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4092821 109 + 22224390 GCUGACUGGUUCUCUUGGCCAGUCAGGACCUUUGGGAUUGGCCCAAGGACCACUUUCUGGACUUACCGGUUAAUCCCUAGAACACUUCGGAAGCUCCUAGGCAACUUUU (((((((((((.....))))))))((((.((((((((((((((..(((.(((.....))).)))...))))))))))..((.....)).)))).)))).)))....... ( -39.20) >DroSec_CAF1 104571 109 + 1 GCUGACUGGUUCUCUUGGCCAGUCAGGACCUUUGGGAUUGGCCCAAGGACCACUUUCCGGACUUACCGGUUAAUCCCUUGAACACUUCGGAAGCUCCUAGGCAACUUGU (((((((((((.....))))))))((((.((((((((((((((...(((......)))((.....)))))))))))).(((.....))))))).)))).)))....... ( -40.00) >DroSim_CAF1 105602 109 + 1 GCUGACUGGUUCUCUUGGCCAGUCAGGACCUUUGGGAUUGGGCCAAGGACCACUUUCCGGACUUACCGGUUAAUCCCUUGAACACUUCGGAAGCUCCUAGGCAACUUUU (((((((((((.....))))))))((((.((((.(((.((...(((((........((((.....))))......)))))..)).))).)))).)))).)))....... ( -38.54) >DroEre_CAF1 110955 106 + 1 ACUGAGUAGUGUUCUUGGCCAGUCAGGACCUUUGGGAUUGGCUCAAGGA---CUUGGAGGACUUUCCGGUUAAUCCCUUGAAUAUUUCAAAAGCUCUUAGACAUCUUAU .(((((.(((((((((((((((((...........))))))).))))))---)((((((....(((.((......))..)))..))))))..))))))))......... ( -30.20) >DroYak_CAF1 103949 100 + 1 AUUGACUAGUGCUCUUGGCCAGCCAGGACCUUU------GGCUCAAGGA---CUUGGAGGAAUUACCGGAUAAUCCUUUCAACACUUCAGAAGCUCUUAGACAACUUCU .((((((((.(.((((((....)))))).).))------)).))))(((---.(((((((.((((.....)))).)))))))...)))(((((...........))))) ( -20.80) >consensus GCUGACUGGUUCUCUUGGCCAGUCAGGACCUUUGGGAUUGGCCCAAGGACCACUUUCAGGACUUACCGGUUAAUCCCUUGAACACUUCGGAAGCUCCUAGGCAACUUUU ...(((((((.......)))))))((((.((((.(((.((...(((((........((((.....))))......)))))..)).))).)))).))))........... (-21.14 = -23.14 + 2.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:29 2006