Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,086,296 – 4,086,416 |
Length | 120 |
Max. P | 0.986419 |
Location | 4,086,296 – 4,086,416 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.58 |
Mean single sequence MFE | -29.10 |
Consensus MFE | -25.20 |
Energy contribution | -26.12 |
Covariance contribution | 0.92 |
Combinations/Pair | 1.06 |
Mean z-score | -1.92 |
Structure conservation index | 0.87 |
SVM decision value | 2.04 |
SVM RNA-class probability | 0.986419 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4086296 120 - 22224390 CACAGAUUGAAAUUGCAAUCAAGCCAUUAUGUACACAUUUGUGCAAGUUAACACGUAAGUUUUUGCUUUUUACUGCACUGAAAAGUGAAAGAAGUGUAAAAUGUGCUGCAGCAAGCACUU ....(((((......))))).........((((((....)))))).....((((.....((((..(((((((......)))))))..))))..)))).....(((((......))))).. ( -29.40) >DroSec_CAF1 98748 119 - 1 -ACAGAUUGAAAUUGCAAUCAAGCCAUUAUGUACACAUUUGUGCGAGUUAACACGUAAGUUUUUGCUUUUUACUGCACUGAAGAGUGAAACAAGUGUAAAAUGUGCUGCAACAAGCACUU -...(((((......)))))..............(((((((((((.(....).))))...(((..(((((((......)))))))..)))))))))).....(((((......))))).. ( -27.80) >DroSim_CAF1 99587 120 - 1 CACAGAUUGAAAUUGCAAUCAAGCCAUUAUGUACACAUUUGUGCGAGUUAACACGUAAGUUUUUGCUUUUUACUGCACUGAAGAGUGAAAGAAGUGUAAAAUGUGCUGCAACAAGCACUU ....(((((......))))).........((((((....)))))).....((((.....((((..(((((((......)))))))..))))..)))).....(((((......))))).. ( -28.80) >DroEre_CAF1 104211 120 - 1 CUCAGAUUGAAAUUGCAAUCAAGCCAUUAUGUACACAUUUUUGCGAGUUAACACGUAUGUUCUUGCUUUUUACUGCAUUGAAGAGUGUAAGAAGUGUAAAAUGUGCUGCAGCAAGCACUU (((.(((((......)))))..((.(..(((....)))..).)))))...((((.((..(((((((........)))....))))..))....)))).....(((((......))))).. ( -27.70) >DroYak_CAF1 97611 120 - 1 CAGAGAUUGAAAUAUCAAUCAAGCCAUUAUGUACAUUUUUGUGCAAACUAACACGUAAGUUGUUGCUUUUUACUGCACUGAAAAGUGUAACAAGUGUGAAAUGUGCUGCAACAAGCACUU ....((((((....))))))((((.....((((((....))))))....(((((....).))))))))(((((((((((....))))))......)))))..(((((......))))).. ( -31.80) >consensus CACAGAUUGAAAUUGCAAUCAAGCCAUUAUGUACACAUUUGUGCGAGUUAACACGUAAGUUUUUGCUUUUUACUGCACUGAAGAGUGAAAGAAGUGUAAAAUGUGCUGCAACAAGCACUU ....(((((......))))).........((((((....)))))).....((((.....(((((((((((((......)))))))))))))..)))).....(((((......))))).. (-25.20 = -26.12 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:27 2006