Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,080,561 – 4,080,661 |
Length | 100 |
Max. P | 0.939229 |
Location | 4,080,561 – 4,080,661 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 91.31 |
Mean single sequence MFE | -16.94 |
Consensus MFE | -14.81 |
Energy contribution | -14.49 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.11 |
Mean z-score | -1.63 |
Structure conservation index | 0.87 |
SVM decision value | 1.28 |
SVM RNA-class probability | 0.939229 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4080561 100 - 22224390 UUAUCGGAUUCAAAAAAAAAAAAAAACCACUUUAGCAACCCACAA-ACCACUUAUUAUUGGAGCUUUAAGCAAAUUAUUGCUGUCGCUUGAGUCCCAAAAA .....((((((((................................-.(((........))).((....(((((....)))))...))))))))))...... ( -17.30) >DroSec_CAF1 93269 91 - 1 UUAUCGGAUUCAAA---------AAACCACUUUAGCAACCCACAA-ACCUCUUAUUAUUGGAGCUUUAAGCGAAUUAUUGCUGUCGCUUGAGUCCCAAAAA .....((((((...---------....................((-(.((((.......)))).)))((((((..........))))))))))))...... ( -16.40) >DroSim_CAF1 93790 91 - 1 UUAUCGGAUUCAAA---------AAACCACUUUAGCAACCCACAA-ACCUCUUAUUAUUGGAGCUUUAAGCGAAUUAUUGCUGUCGCUUGAGUCCCAAAAA .....((((((...---------....................((-(.((((.......)))).)))((((((..........))))))))))))...... ( -16.40) >DroEre_CAF1 98818 96 - 1 UUAUCGGAUUCAAAAAAAA----AAAACACUUUAGCAACCCACAA-ACCUCUUAUUAUUGGAGCUUUAAGCGAAUUAUUGCUGUCGGUUGAGUCCCGAAAA ...((((((((......((----(......)))...((((.((((-(.((((.......)))).))).(((((....))))))).)))))))).))))... ( -17.40) >DroYak_CAF1 92216 92 - 1 UUAUCGGAUUCAAAA---------AACCACUUUAGCAACCCACAAAACCUCUUAUUAUUGGAGCUUUAAGCGAAUUAUUGCUGUCGGUUGGGUCCCAAAAC .....(((((((...---------.(((....((((((.........((..........)).((.....))......))))))..))))))))))...... ( -17.20) >consensus UUAUCGGAUUCAAAA________AAACCACUUUAGCAACCCACAA_ACCUCUUAUUAUUGGAGCUUUAAGCGAAUUAUUGCUGUCGCUUGAGUCCCAAAAA .....((((((((....................(((...(((................))).)))...(((((....))))).....))))))))...... (-14.81 = -14.49 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:23 2006