Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,074,512 – 4,074,615 |
Length | 103 |
Max. P | 0.514457 |
Location | 4,074,512 – 4,074,615 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 84.91 |
Mean single sequence MFE | -30.80 |
Consensus MFE | -19.36 |
Energy contribution | -19.44 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.08 |
Mean z-score | -1.88 |
Structure conservation index | 0.63 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.514457 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4074512 103 + 22224390 GACAGUGUGUGCGUUAGGCACUGUAUUUGUGUAGGGCGAAAUGCUUCGCUGGGCACCGGAAUAUCCUGGGUAUCUGGAUAUUCAG----GGGGCGGGGGGGUUUUUU .(((((((.((...)).))))))).....(((..((((((....))))))..)))((.(....((((((((((....))))))))----))..).)).......... ( -34.20) >DroSec_CAF1 87290 89 + 1 GACAGUGUGUGCGUUAGGCACUGUAUUUGUGUAGGGCGAAAUGCUUGGCUGGGCACCGGAAUAUC-UGGGUAUCUGGAUAUUCGG----CGGGA------------- .(((((((.((...)).)))))))....((((..(((.((....)).)))..))))(.(((((((-..(....)..))))))).)----.....------------- ( -28.90) >DroSim_CAF1 86195 89 + 1 GACAGUGUGUGCGUUAGGCACUGUAUUUGUGUAGGGCGAAAUGCUUGGCUGGGCACCGGAAUAUC-UGGGUAUCUGGAUAUUCGG----CGGGA------------- .(((((((.((...)).)))))))....((((..(((.((....)).)))..))))(.(((((((-..(....)..))))))).)----.....------------- ( -28.90) >DroEre_CAF1 86761 93 + 1 GACAGUGUGUGCGUUAGGCACUGUAUUUGUGUAGGGCGAAAUGCUUGGCUGGGCACCGGAAUAUC-UGGGUAUCUGAAUAUCUGGAUAUCGGGG------------- .(((((((.((...)).))))))).....(((..(((.((....)).)))..)))((.((.((((-..(((((....)))))..)))))).)).------------- ( -30.10) >DroYak_CAF1 86135 93 + 1 AACACUGUGCAUGUUAGGCACUGUAUUUGUGUAGGGCGAAAUGCUUGGCUGGGCACCAGAAUAUC-UGGGUAUCUGUAUAUCUGGAUAUCUGGG------------- .....(((.((.((((((((((.(((....))).)).....)))))))))).)))(((((.((((-..(((((....)))))..))))))))).------------- ( -31.90) >consensus GACAGUGUGUGCGUUAGGCACUGUAUUUGUGUAGGGCGAAAUGCUUGGCUGGGCACCGGAAUAUC_UGGGUAUCUGGAUAUUCGG____CGGGA_____________ .(((((((.((...)).)))))))....((((..(((.((....)).)))..))))((((.(((.....)))))))............................... (-19.36 = -19.44 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:22 2006