Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,073,921 – 4,074,027 |
Length | 106 |
Max. P | 0.783977 |
Location | 4,073,921 – 4,074,027 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 73.23 |
Mean single sequence MFE | -19.97 |
Consensus MFE | -12.32 |
Energy contribution | -12.12 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.27 |
Mean z-score | -1.62 |
Structure conservation index | 0.62 |
SVM decision value | 0.57 |
SVM RNA-class probability | 0.783977 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4073921 106 - 22224390 CAAAACAAAACGAAAAAGUGGGAAAAAAAUAGAAAAUCAAAAACGAUACUGACGUUUAGCUAAGCGCCGUGAAAGGCCUUGACUAUGUAUCGGAUGUGUCCCAUUU---- ...............((((((((............(((......))).((((..(.(((.((((.(((......))))))).))).)..)))).....))))))))---- ( -24.80) >DroSec_CAF1 86747 106 - 1 AAAAAAACAAAAAAAAAGUUUCAAAAAAAUAGAAAAUCAAAAACGAUCCUGACGUUUAGCUAAGCGCCGUGAAAGGCCUUGACUAUGUAUCGGAUGUGUCCCAUUU---- ..........................................((.((((.((..(.(((.((((.(((......))))))).))).)..)))))))).........---- ( -16.30) >DroSim_CAF1 85651 105 - 1 AAAAACACAAAA-AAAAGUUUUAAAAAAAUAGAAAAUCAAAAACGAUCCUGACGUUUAGCUAAGCGCCGUGAAAGGCCUUGACUAUGUAUCGGAUGUGUCCCAUUU---- ....((((....-....(((((.................))))).((((.((..(.(((.((((.(((......))))))).))).)..)))))))))).......---- ( -19.63) >DroYak_CAF1 85590 87 - 1 -------------AGA------AAAAAAAUAGAAUAUCAAAAACGAUCCUGACGUUUAGUUAAGCGCCGUGAAAGGCCUUGACUGUGUAUCGGAUGUGUCCCAUUU---- -------------...------....................((.((((.((..(.((((((((.(((......))))))))))).)..)))))))).........---- ( -20.60) >DroAna_CAF1 103690 88 - 1 GGAAAAAAAAA--GAAAGUGCCGG--------AAAACCA--------GUUGAUGCUUAGUUAAACGCCGUGAAAGGCCUUGACUUUGUAUUGGAUAUU----AUUGGGAA ...........--.......((.(--------(......--------.(..((((..((((((..(((......))).))))))..))))..).....----.)).)).. ( -18.52) >consensus AAAAAAAAAAA__AAAAGUGUCAAAAAAAUAGAAAAUCAAAAACGAUCCUGACGUUUAGCUAAGCGCCGUGAAAGGCCUUGACUAUGUAUCGGAUGUGUCCCAUUU____ ................................................((((..(.(((.((((.(((......))))))).))).)..))))................. (-12.32 = -12.12 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:21 2006