Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,069,167 – 4,069,259 |
Length | 92 |
Max. P | 0.652019 |
Location | 4,069,167 – 4,069,259 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 85.08 |
Mean single sequence MFE | -18.60 |
Consensus MFE | -14.32 |
Energy contribution | -15.43 |
Covariance contribution | 1.11 |
Combinations/Pair | 1.05 |
Mean z-score | -2.14 |
Structure conservation index | 0.77 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.652019 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4069167 92 + 22224390 UAUGAAACGUGUGGCAAACACAAAAAACGCUGCCGCAGCACGA--CAACUGCGGAAGAGCGAAAUAUUGA-AGCAAUUAUAAAAUUUACAGGAAA (((((...((((.....))))......((((.((((((.....--...))))))...)))).........-.....))))).............. ( -21.30) >DroVir_CAF1 136467 84 + 1 UAUGAAACGUGAAACAAACACGGG-------GCGGAAAUA---CAUAAAUACGGAAAUACAAAAUAUGGGGCGCAAUUAUAAAUUUUAGACCAA- (((((..((((.......))))..-------(((......---((((.....(......)....))))...)))..))))).............- ( -7.30) >DroSec_CAF1 81983 92 + 1 UAUGAAACGUGUGGCAAACACAAAAAACGCUGCCGCAGCACGA--CAACUGCGGAAGAGCGAAAUAUUGU-AGCAAUUAUAAAAUUUACAGCAAA ..((..((((((.....))))......((((.((((((.....--...))))))...)))).......))-..)).................... ( -21.60) >DroSim_CAF1 80911 92 + 1 UAUGAAACGUGUGGCAAACACAAAAAGCGCUGCCGCAGCACGA--CAACUGCGGAAGAGCGAAAUAUUGA-AGCAAUUAUAAAAUUUACAGCAAA ........((((.....)))).......((((((((((.....--...))))))....((..........-.))..............))))... ( -21.20) >DroEre_CAF1 81267 92 + 1 UAUGAAACGUGUGGCAAACACAAAAAACGCUGCCGCAGCACGA--CAACUGCGGAAGAGCGAAAUAUUGA-AGCAAUUAUAAAAUUUACAGCAAA (((((...((((.....))))......((((.((((((.....--...))))))...)))).........-.....))))).............. ( -21.30) >DroYak_CAF1 80917 91 + 1 UAUGAAACGUGUGGCAAACACAAAAAACGUUGCCGCAGCACGA--CAACUGCGGAAGAACGAAAUAUUGA-AGCAAUUAUAAAAUUUACAGCAA- (((((...((((.....))))......((((.((((((.....--...))))))...)))).........-.....))))).............- ( -18.90) >consensus UAUGAAACGUGUGGCAAACACAAAAAACGCUGCCGCAGCACGA__CAACUGCGGAAGAGCGAAAUAUUGA_AGCAAUUAUAAAAUUUACAGCAAA (((((...((((.....))))......((((.((((((..........))))))...))))...............))))).............. (-14.32 = -15.43 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:20 2006