Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 524,319 – 524,497 |
Length | 178 |
Max. P | 0.994350 |
Location | 524,319 – 524,417 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 88.52 |
Mean single sequence MFE | -40.64 |
Consensus MFE | -35.85 |
Energy contribution | -35.29 |
Covariance contribution | -0.56 |
Combinations/Pair | 1.12 |
Mean z-score | -2.87 |
Structure conservation index | 0.88 |
SVM decision value | 2.47 |
SVM RNA-class probability | 0.994350 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 524319 98 - 22224390 CAAAGUUGUUCGAGAUAUCCAAGGUGGUGCAGGUGGGAACUCAGCU----CACAAUG--------GGGAAUCCCACACACGCCGCCUGCACCACAUCGAGGGGCAUCAAA ....(((.(((((..........(((((((((((((((.......)----)....((--------((....))))......))))))))))))).))))).)))...... ( -39.20) >DroSec_CAF1 10807 102 - 1 CAAAGUUGUUCGAGAUAUCCAAGGUGGUGCAGGUGGGAACCCAACUCCUGCACAAUG--------GGGAAUCCCACACACGCCGCCUGCAGCACAUCGAGGGGCAUCAAA ....(((.(((((........((((((((...((((((.((((............))--------))...))))))...))))))))........))))).)))...... ( -39.79) >DroSim_CAF1 11130 102 - 1 CAAAGUUGUUCGAGAUAUCCAAGGUGGUGCAGGUGGGAGCCCAACUCCUGCACAAUG--------GGGAAUCCCACACACGCCGCCUGCAGCACAUCGAGGGGCAUCAAA ....(((.(((((........((((((((...((((((.((((............))--------))...))))))...))))))))........))))).)))...... ( -39.79) >DroEre_CAF1 15876 110 - 1 CAAAGUUGUUCGAGAUACCCAAGGUGGUGCAGGUGGGGGUCCAAAUCCUGCAGAAUGGGGGUGUGGGGAAUCCCACACACGCCGCCUCCAGCGAAUCGAGGGGCAUCAAA ....(((.(((((........((((((((...(((((..(((..(((((.(.....).))).))..)))..)))))...))))))))........))))).)))...... ( -43.79) >consensus CAAAGUUGUUCGAGAUAUCCAAGGUGGUGCAGGUGGGAACCCAACUCCUGCACAAUG________GGGAAUCCCACACACGCCGCCUGCAGCACAUCGAGGGGCAUCAAA ....(((.(((((........((((((((...((((((.(((.......................)))..))))))...))))))))........))))).)))...... (-35.85 = -35.29 + -0.56)
Location | 524,377 – 524,497 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 83.60 |
Mean single sequence MFE | -31.78 |
Consensus MFE | -23.70 |
Energy contribution | -25.42 |
Covariance contribution | 1.72 |
Combinations/Pair | 1.11 |
Mean z-score | -1.68 |
Structure conservation index | 0.75 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.645979 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 524377 120 - 22224390 UUAUAUAUAUUGUACUUCGUUCAAGUCCCAAUUUUUACCACCGUAGUUUGCUGCAGUGCAGCAGCAACAGUCUCAUCAAGCAAAGUUGUUCGAGAUAUCCAAGGUGGUGCAGGUGGGAAC .........................(((((.(((.(((((((...(((.(((((......)))))))).(((((..(((......)))...)))))......))))))).)))))))).. ( -35.40) >DroSec_CAF1 10869 107 - 1 UUAUAC-------------UUCAAGUCCCAAUUUUUACCACCGUAGUUUGCUGCAGUGCAGCAGCAACAGUCUCAUCAAGCAAAGUUGUUCGAGAUAUCCAAGGUGGUGCAGGUGGGAAC ......-------------......(((((.(((.(((((((...(((.(((((......)))))))).(((((..(((......)))...)))))......))))))).)))))))).. ( -35.40) >DroSim_CAF1 11192 107 - 1 UUAUAC-------------UUCAAGUCCCAAUUUUUACCACCGUAGUUUGCUGCAGUGCAGCAGCAACAGUCUCAUCAAGCAAAGUUGUUCGAGAUAUCCAAGGUGGUGCAGGUGGGAGC ......-------------......(((((.(((.(((((((...(((.(((((......)))))))).(((((..(((......)))...)))))......))))))).)))))))).. ( -35.40) >DroEre_CAF1 15946 106 - 1 -UAUAC-------------UUCAUAACACCAUUUUUCCCACCGAAACUCGCUGCAGUGCAUCAGCAACAGUCUCAUCAAGCAAAGUUGUUCGAGAUACCCAAGGUGGUGCAGGUGGGGGU -.....-------------...............((((((((...((.((((...(((..((((((((..(((.....)).)..)))))).))..)))....))))))...)))))))). ( -26.80) >DroYak_CAF1 9651 102 - 1 UUAUAU-------------UUCAUAUUACAAGUUUCAGCAGCGAAAUUCGCUGCAGUGCAGCAGCAACAGUCUCAUCAAGCAAAGUUGUUCGGCACAUCCAAGGUGGUGCAGGUG----- ......-------------....((((((........((((((.....)))))).((((.(.((((((..(((.....)).)..))))))).)))).......))))))......----- ( -25.90) >consensus UUAUAC_____________UUCAAGUCCCAAUUUUUACCACCGUAGUUUGCUGCAGUGCAGCAGCAACAGUCUCAUCAAGCAAAGUUGUUCGAGAUAUCCAAGGUGGUGCAGGUGGGAAC .........................((((.((((.(((((((.......(((((......)))))....(((((..(((......)))...)))))......))))))).)))))))).. (-23.70 = -25.42 + 1.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:52 2006