Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,067,921 – 4,068,014 |
Length | 93 |
Max. P | 0.973249 |
Location | 4,067,921 – 4,068,014 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 77.16 |
Mean single sequence MFE | -35.30 |
Consensus MFE | -17.89 |
Energy contribution | -19.90 |
Covariance contribution | 2.00 |
Combinations/Pair | 1.27 |
Mean z-score | -2.63 |
Structure conservation index | 0.51 |
SVM decision value | 1.71 |
SVM RNA-class probability | 0.973249 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4067921 93 - 22224390 G---------------CAACUGUCGUGGUCUUGCCGCUGCAGUCAUUGGCCACAUUGGUGAUCAAGUGACUCAGCAAAUCAACCACAAGCAACACGCUCAAAUCCACA .---------------........((((..(((..((((.((((((((..(((....)))..).)))))))))))............(((.....))))))..)))). ( -27.80) >DroSec_CAF1 80655 108 - 1 GGACUUGUGAUGGGUGUAACUGUAGUGGUCUUGCCGCUGCAGUCGUUGGCCACAUUGGUGAUCAAGUGGCUCAGCAAAUCAACCACAAGCAACACGCUCAAAUCCACA (((....(((.(.((((.((((((((((.....)))))))))).(((((((((.(((.....)))))))).))))................)))).))))..)))... ( -41.30) >DroSim_CAF1 79640 108 - 1 GGACUUGUGAUGGGUUUAACUGUAGUGGUCUUGCCGCUGCAGUCGUUGGCCACAUUGGUGAUCAAGUGGCUCAGCAAAUCAACCACAAGCAACACGCUCAAAUCCACA (((.(((((...(((((.((((((((((.....)))))))))).(((((((((.(((.....)))))))).)))))))))...)))))((.....)).....)))... ( -41.50) >DroEre_CAF1 80020 105 - 1 GGACUUGUAACGGGUGUAACUGUCGUAG---UGCCGCUGCAGUCAUUGGCCACAUUGGUGAUCAAGUGACUCAGCAAAUCAACCACAAGCAACACGCUCAAAUCCACA (((.(((...((((..(.((....)).)---..))((((.((((((((..(((....)))..).)))))))))))...................))..))).)))... ( -30.50) >DroYak_CAF1 79691 105 - 1 GGACUUGUAAUGGGUGUGACUGUCGUGG---UGCCGCUGCAGUCAUUGGCCACAGUGGUGAUCAAGUGACUCAGCAAAUCAACCACAAGCAACACGCUCAAAUCCACA (((.(((....(.((((..((...((((---(...((((.((((((((..(((....)))..).)))))))))))......))))).))..)))).).))).)))... ( -37.30) >DroPer_CAF1 108389 96 - 1 GUGUCCGUUACGGGUGUAUC------------GGUGCUGCAGUCGUUGGCCACAUCCCCAAUGAGUUGGUUCAGCACACCCACAUCUGCCAGCACAUUAGCGUUCACA (((..((((((((.....))------------)((((((((((((((((........)))))))((.(((.......))).))..))).))))))..)))))..))). ( -33.40) >consensus GGACUUGUAAUGGGUGUAACUGUCGUGG___UGCCGCUGCAGUCAUUGGCCACAUUGGUGAUCAAGUGACUCAGCAAAUCAACCACAAGCAACACGCUCAAAUCCACA ..........(((((((.......((((.......((((.((((((((..(((....)))..))).))))))))).......)))).......)))))))........ (-17.89 = -19.90 + 2.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:19 2006