Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,066,908 – 4,067,006 |
Length | 98 |
Max. P | 0.980752 |
Location | 4,066,908 – 4,067,006 |
---|---|
Length | 98 |
Sequences | 3 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 85.40 |
Mean single sequence MFE | -31.93 |
Consensus MFE | -28.20 |
Energy contribution | -28.20 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.91 |
Structure conservation index | 0.88 |
SVM decision value | 0.86 |
SVM RNA-class probability | 0.869018 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4066908 98 + 22224390 GAAGCGGAUCCAGCAGUGGAUCUUCUGGAAGCGGAUCCAGCAGUGGAUCUUCUGGAAGCGGAUCCAGCAGUGGAUCUUCUGGAAGCGGAUCCUCCUCU ((.(.((((((.((..(((((((.(.....).))))))).(((.((((((.(((((......)))))....)))))).)))...)))))))).).)). ( -39.40) >DroSec_CAF1 79756 78 + 1 --------------------UCUUCUGGAAGCGGAUCCAGCAGUGGAUCUUCUGGAAGCGGAUCCAGCAGUGGAUCUUCUGGAAGCGGAUCCUCCUCU --------------------.((((..((...(((((((((..(((((((.(.....).)))))))))..)))))))))..)))).((.....))... ( -28.20) >DroSim_CAF1 78745 78 + 1 --------------------UCUUCUGGAAGCGGAUCCAGCAGUGGAUCUUCUGGAAGCGGAUCCAGCAGUGGAUCUUCUGGAAGCGGAUCCUCCUCU --------------------.((((..((...(((((((((..(((((((.(.....).)))))))))..)))))))))..)))).((.....))... ( -28.20) >consensus ____________________UCUUCUGGAAGCGGAUCCAGCAGUGGAUCUUCUGGAAGCGGAUCCAGCAGUGGAUCUUCUGGAAGCGGAUCCUCCUCU .....................((((..((...(((((((((..(((((((.(.....).)))))))))..)))))))))..)))).((.....))... (-28.20 = -28.20 + -0.00)
Location | 4,066,908 – 4,067,006 |
---|---|
Length | 98 |
Sequences | 3 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 85.40 |
Mean single sequence MFE | -31.47 |
Consensus MFE | -27.90 |
Energy contribution | -27.90 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.79 |
Structure conservation index | 0.89 |
SVM decision value | 1.87 |
SVM RNA-class probability | 0.980752 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4066908 98 - 22224390 AGAGGAGGAUCCGCUUCCAGAAGAUCCACUGCUGGAUCCGCUUCCAGAAGAUCCACUGCUGGAUCCGCUUCCAGAAGAUCCACUGCUGGAUCCGCUUC .((((.(((((((....(((..((((.....(((((..((..(((((.((.....)).)))))..))..)))))..))))..))).))))))).)))) ( -38.60) >DroSec_CAF1 79756 78 - 1 AGAGGAGGAUCCGCUUCCAGAAGAUCCACUGCUGGAUCCGCUUCCAGAAGAUCCACUGCUGGAUCCGCUUCCAGAAGA-------------------- .((((.(((((((....(((..((((.....(((((......)))))..))))..))).))))))).)))).......-------------------- ( -27.90) >DroSim_CAF1 78745 78 - 1 AGAGGAGGAUCCGCUUCCAGAAGAUCCACUGCUGGAUCCGCUUCCAGAAGAUCCACUGCUGGAUCCGCUUCCAGAAGA-------------------- .((((.(((((((....(((..((((.....(((((......)))))..))))..))).))))))).)))).......-------------------- ( -27.90) >consensus AGAGGAGGAUCCGCUUCCAGAAGAUCCACUGCUGGAUCCGCUUCCAGAAGAUCCACUGCUGGAUCCGCUUCCAGAAGA____________________ .((((.(((((((....(((..((((.....(((((......)))))..))))..))).))))))).))))........................... (-27.90 = -27.90 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:18 2006