Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,060,552 – 4,060,644 |
Length | 92 |
Max. P | 0.872105 |
Location | 4,060,552 – 4,060,644 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 93.83 |
Mean single sequence MFE | -21.12 |
Consensus MFE | -17.40 |
Energy contribution | -18.36 |
Covariance contribution | 0.96 |
Combinations/Pair | 1.04 |
Mean z-score | -1.70 |
Structure conservation index | 0.82 |
SVM decision value | 0.88 |
SVM RNA-class probability | 0.872105 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4060552 92 + 22224390 AUAUAUUUCAAAUAGCCAAAUUGGCAGCAUUUUAAGUAGAGGCUGUUGCUUCUUGUUUAUGCAACGAAACUAAUUUAAAGUGCUUCACGCGG ..............(((.....)))((((((((((((.(((((....)))))((((....))))........))))))))))))........ ( -23.30) >DroSec_CAF1 73593 90 + 1 --AUAUUUAAAAUAGCCAAAUUGGCAGCAUUUGAAGUAGAGGCUGUUGCUUCUUGUUUAUGCAACGAAACUAAUUUAAAGUGCUUCACGCGG --............(((.....))).((...((((((((((((....)))))((((....))))................))))))).)).. ( -20.70) >DroSim_CAF1 72630 90 + 1 --AUAUUUAAAAUAGCCAAAUUGGCAGCAUUUUAAGUAGAGGCUGUUGCUUCUUGUUUAUGCAACGAAACUAAUUUAAAGUGCUUCACGCGG --............(((.....)))((((((((((((.(((((....)))))((((....))))........))))))))))))........ ( -23.30) >DroEre_CAF1 73638 89 + 1 --AUAUUUAAAAUAGCCAAAUUGUCAGCAUUUU-GGUAGAGGCUGUUGCUUCUUGUUUAUGCAACGAAACUAAUUUAAAGUGCUUCACGCGG --............((((((.((....)).)))-))).(((((((((((...........))))))..(((.......))))))))...... ( -19.90) >DroYak_CAF1 72946 89 + 1 --AUAUCUAAAAUAGCCAAACUGGCAACAUUUU-GGUAGAGACUGUUGCUUCUUGUUUAUGCAACGAAACUAAUUUAAAGUACUUUACGCGG --............((((((.((....)).)))-)((((((..((((((...........))))))..(((.......))).)))))))).. ( -18.40) >consensus __AUAUUUAAAAUAGCCAAAUUGGCAGCAUUUUAAGUAGAGGCUGUUGCUUCUUGUUUAUGCAACGAAACUAAUUUAAAGUGCUUCACGCGG ..............(((.....)))((((((((((((..((..((((((...........))))))...)).))))))))))))........ (-17.40 = -18.36 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:15 2006