Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,046,086 – 4,046,194 |
Length | 108 |
Max. P | 0.710831 |
Location | 4,046,086 – 4,046,194 |
---|---|
Length | 108 |
Sequences | 3 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 97.58 |
Mean single sequence MFE | -30.93 |
Consensus MFE | -28.72 |
Energy contribution | -28.83 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.03 |
Mean z-score | -1.87 |
Structure conservation index | 0.93 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.710831 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4046086 108 + 22224390 AGGGUGCAGGGGGCGUGGAUG--CUGGGCGUGAGAGACUGACUAAGAAGUCAAAGAGCUAUGAGUCAGAGUAUUCUGAGAAUGUCCUCAGUUCGAGGAAGAGGUAUUAAG ..(((((.(((((((((((((--((...(....)...((((((....(((......)))...))))))))))))).....))))))))..(((......))))))))... ( -29.80) >DroSec_CAF1 59518 110 + 1 AGGGUGCAGGGGGCGUGGAUGCGCUGUGCGUGAGAGACUGACUAAGAAGUCAAAGAGCCAUGAGUCAGAGUAUUCUGAGAAUGUCCUCAGUUCGAGGAAGAGGUAUUAAG ..(((((.((((((((((((((.(((..((((.(....(((((....))))).....)))))...))).)))))).....))))))))..(((......))))))))... ( -31.30) >DroSim_CAF1 56543 110 + 1 AGGGUGCAGGGGGCGUGGAUGCGCUGGGCGUGAGAGACUGACUAAGAAGUCAAAGAGCCAUGAGUCAGAGUAUUCUGAGAAUGUCCUCAGUUCGAGGAAGAGGUAUUAAG ..(((((.((((((((((((((.((((.((((.(....(((((....))))).....)))))..)))).)))))).....))))))))..(((......))))))))... ( -31.70) >consensus AGGGUGCAGGGGGCGUGGAUGCGCUGGGCGUGAGAGACUGACUAAGAAGUCAAAGAGCCAUGAGUCAGAGUAUUCUGAGAAUGUCCUCAGUUCGAGGAAGAGGUAUUAAG ..(((((.((((((((((((((.(((..((((.(....(((((....))))).....)))))...))).)))))).....))))))))..(((......))))))))... (-28.72 = -28.83 + 0.11)
Location | 4,046,086 – 4,046,194 |
---|---|
Length | 108 |
Sequences | 3 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 97.58 |
Mean single sequence MFE | -20.10 |
Consensus MFE | -17.33 |
Energy contribution | -17.67 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.14 |
Structure conservation index | 0.86 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.629802 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4046086 108 - 22224390 CUUAAUACCUCUUCCUCGAACUGAGGACAUUCUCAGAAUACUCUGACUCAUAGCUCUUUGACUUCUUAGUCAGUCUCUCACGCCCAG--CAUCCACGCCCCCUGCACCCU .....................(((((((....(((((....)))))............(((((....)))))))).)))).((...(--(......)).....))..... ( -18.20) >DroSec_CAF1 59518 110 - 1 CUUAAUACCUCUUCCUCGAACUGAGGACAUUCUCAGAAUACUCUGACUCAUGGCUCUUUGACUUCUUAGUCAGUCUCUCACGCACAGCGCAUCCACGCCCCCUGCACCCU .....................(((((((....(((((....)))))............(((((....)))))))).)))).(((..(((......)))....)))..... ( -21.90) >DroSim_CAF1 56543 110 - 1 CUUAAUACCUCUUCCUCGAACUGAGGACAUUCUCAGAAUACUCUGACUCAUGGCUCUUUGACUUCUUAGUCAGUCUCUCACGCCCAGCGCAUCCACGCCCCCUGCACCCU ............(((((.....))))).....(((((....))))).....(((...((((((....)))))).......(((...))).......)))........... ( -20.20) >consensus CUUAAUACCUCUUCCUCGAACUGAGGACAUUCUCAGAAUACUCUGACUCAUGGCUCUUUGACUUCUUAGUCAGUCUCUCACGCCCAGCGCAUCCACGCCCCCUGCACCCU .....................(((((((....(((((....)))))............(((((....)))))))).)))).((...(.((......)).)...))..... (-17.33 = -17.67 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:11 2006