Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,041,332 – 4,041,434 |
Length | 102 |
Max. P | 0.597456 |
Location | 4,041,332 – 4,041,434 |
---|---|
Length | 102 |
Sequences | 3 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 82.33 |
Mean single sequence MFE | -19.37 |
Consensus MFE | -18.07 |
Energy contribution | -18.40 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -0.30 |
Structure conservation index | 0.93 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.597456 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4041332 102 + 22224390 ACGUGCUCCUUCCAUCCACUCCACUCGACUCCUCUCCAUCGCCCGAUCCCUCGGCACAGAUAAUGCCCGUUAGCCGUAUCUGUAUCUGGGUUUGCUGACUCA .((.((....((((..........................(((.((....)))))(((((((..((......))..)))))))...))))...))))..... ( -18.50) >DroSec_CAF1 54955 79 + 1 CCGUGCUC-----------------------CUCUCCGUCGCCCGAUCCCUCGGCACAGAUAAUGCCCGUUAGCCGUAUCUGUAUCUGGGUUUGCUGACUCA ........-----------------------......((((..(((.(((..(..(((((((..((......))..)))))))..).))).))).))))... ( -19.80) >DroSim_CAF1 52201 79 + 1 CCGUGCUC-----------------------CUCUCCGUCGCCCGAUCCCUCGGCACAGAUAAUGCCCGUUAGCCGUAUCUGUAUCUGGGUUUGCUGACUCA ........-----------------------......((((..(((.(((..(..(((((((..((......))..)))))))..).))).))).))))... ( -19.80) >consensus CCGUGCUC_______________________CUCUCCGUCGCCCGAUCCCUCGGCACAGAUAAUGCCCGUUAGCCGUAUCUGUAUCUGGGUUUGCUGACUCA .....................................((((..(((.(((..(..(((((((..((......))..)))))))..).))).))).))))... (-18.07 = -18.40 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:09 2006