Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,040,655 – 4,040,746 |
Length | 91 |
Max. P | 0.597348 |
Location | 4,040,655 – 4,040,746 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 93.36 |
Mean single sequence MFE | -22.04 |
Consensus MFE | -20.00 |
Energy contribution | -20.00 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.14 |
Structure conservation index | 0.91 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.597348 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4040655 91 + 22224390 CG--GAUAUCUGUGUGAAAGAGUGCUUUAUCUUUAUGCGCUUUACUCAGAAUUUGCUGCAGAGCUUAAAACAUAAAGUCCGAAAGUGACGACA ((--(((.((((.((((...(((((...........))))))))).))))....(((....)))............)))))............ ( -20.90) >DroSec_CAF1 54286 93 + 1 CGGCGAUAUCUGUGUGAAAGAGUGCUUUAUCUUUAUGCGCUUUACUCAGAAUUUGCUGCAGAGCUUAAAACAUAAAGUCCGAAAGUGACGACA ((((((..((((.((((...(((((...........))))))))).))))..))))))..................((((....).))).... ( -24.90) >DroSim_CAF1 51530 93 + 1 CGGGGAUAUCUGUGUGAAAGAGUGCUUUAUCUUUAUGCGCUUUACUCAGAAUUUGCUGCAGAGCUUAAAACAUAAAGUCCGAAAGUGACGACA (((.((..((((.((((...(((((...........))))))))).))))..)).)))..................((((....).))).... ( -21.10) >DroEre_CAF1 54066 85 + 1 CG--GAUAUCUGUGUGAAAGAGUGCUU------UAUGCGCUUUACUCAGAAUUUGCUGCAGAGCUUAAAACAUAAAGUCCGCAAGUGACGACA ((--(((.((((.((((...(((((..------...))))))))).))))....(((....)))............)))))............ ( -21.20) >DroYak_CAF1 52550 85 + 1 CG--GAUAUCUGUGUGAAAGAGUGCUU------CAUGCGCUUUACUCAGAAUUUGCUGCAGAGCUUAAAACGUAAAGUCCGAAAGUGACGACA ..--....((((.((((...(((((..------...))))))))).))))....(((....))).......((...((((....).))).)). ( -22.10) >consensus CG__GAUAUCUGUGUGAAAGAGUGCUUUAUCUUUAUGCGCUUUACUCAGAAUUUGCUGCAGAGCUUAAAACAUAAAGUCCGAAAGUGACGACA ........((((.((((...(((((...........))))))))).))))....(((....)))............((((....).))).... (-20.00 = -20.00 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:08 2006