Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 523,957 – 524,056 |
Length | 99 |
Max. P | 0.500000 |
Location | 523,957 – 524,056 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 87.50 |
Mean single sequence MFE | -22.31 |
Consensus MFE | -18.47 |
Energy contribution | -19.13 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -1.66 |
Structure conservation index | 0.83 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 523957 99 - 22224390 AAGAUGGGAAGAUGGAUAGACAGACGGAUUGUUAGCUGCAUAGAUAGAAACAGGAAUAUAGGAUAUACAAAAAUCGUAUGUGUGUGCAGACUAGCAUCC----- .........................((((.((((((((((((.............(((((.(((........))).))))).))))))).)))))))))----- ( -21.64) >DroSec_CAF1 10448 96 - 1 AAG--------AUGGAUAGACAGACGGAUUUUUAGCUGCAUAGAUAGAAACAGGAAUAUGGGAUAUACAAAGAACGUAUGUGUGUGCAGCCUAGCAUCCUCGAU ...--------...........((.((((.((..((((((((........((......))..((((((.......)))))).))))))))..)).))))))... ( -21.40) >DroSim_CAF1 10772 95 - 1 AAG--------AUGGAUAGACAGACGGAUUGUUAGCUGCAU-GAUAGAAACAGGAAUAUGGGAUAUACAAAGAACGUAUGUGUGUGCAGCCUAGCAUCCUCGAU ...--------...........((.((((.(((((((((((-........((......))(.((((((.......)))))).))))))).)))))))))))... ( -23.90) >consensus AAG________AUGGAUAGACAGACGGAUUGUUAGCUGCAUAGAUAGAAACAGGAAUAUGGGAUAUACAAAGAACGUAUGUGUGUGCAGCCUAGCAUCCUCGAU .........................((((.(((((((((((.........((......))(.((((((.......)))))).))))))).)))))))))..... (-18.47 = -19.13 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:49 2006