Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,033,827 – 4,033,929 |
Length | 102 |
Max. P | 0.524402 |
Location | 4,033,827 – 4,033,929 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 81.19 |
Mean single sequence MFE | -27.86 |
Consensus MFE | -18.80 |
Energy contribution | -18.16 |
Covariance contribution | -0.64 |
Combinations/Pair | 1.29 |
Mean z-score | -1.57 |
Structure conservation index | 0.67 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.524402 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4033827 102 + 22224390 GUGGGCUAAAGUUACUGCAUGGUCCACUAGGUAACUCUGGGGCACGGAAUAAUCAAAGCCUCUUGCCACUUA-AUUGAGGAAAAACUCUUCGUAUAUUAUA---AU----- ((((((((..((....)).))))))))..(((((....(((((...((....))...)))))))))).....-...(((((.....)))))..........---..----- ( -26.50) >DroSec_CAF1 47510 99 + 1 GUGGGCUAAAGUUGCUGCAUGGUCCACUAGGUAAUUCUGGGGCACGGAAUAAUCAAAGCCUCUUCCCAAUUAAAUUGGGGAAAAACUCUUCGGAUAUUA------------ ((((((((..((....)).))))))))..(((.((((((.....)))))).)))........((((((((...)))))))).....((....)).....------------ ( -27.70) >DroSim_CAF1 43767 98 + 1 GUGGGCUAAAGCUGCUGCAUGGUCCACUAGGUAACUCUGGGGCACGGAAUAAUCAAAGCCUCUUGCCACUUA-AUUGGGGAAAAACUCUUCGGAUAUUA------------ ((((((((..((....)).))))))))..(((((....(((((...((....))...)))))))))).....-.(((((((.....)))))))......------------ ( -28.40) >DroEre_CAF1 47266 108 + 1 GUGGGCUAAAGUUACUGCAUGGCCCACUAGAUAACUCUCGGGCACAGAAUAAUGAAAGCCU--UGCUUUUUA-AUGGAGGAAAAACUCUCCAGAUAUUAGGUGAGCGAAAG ((((((((..((....)).)))))))).......((.(((..(((..((((..((((((..--.))))))..-.((((((......))))))..))))..)))..))).)) ( -32.40) >DroYak_CAF1 45914 104 + 1 GUGGGAUAAAGUUACUGCAUGGUCCACUAGAUAACUCUGUGGCACAGAAUAAUGAAAGCCUCAUGCCUCUUA-AUCGAGGAAAGCCUCGGCAGAUAAUAAA---AUGA--- ..........((((((((...((((((.(((....))))))).))(((...((((.....))))...)))..-..(((((....))))))))).))))...---....--- ( -24.30) >consensus GUGGGCUAAAGUUACUGCAUGGUCCACUAGGUAACUCUGGGGCACGGAAUAAUCAAAGCCUCUUGCCACUUA_AUUGAGGAAAAACUCUUCGGAUAUUA____________ ((((((((..((....)).))))))))........((((((((..............)))................(((......))).)))))................. (-18.80 = -18.16 + -0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:06 2006