Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,033,091 – 4,033,182 |
Length | 91 |
Max. P | 0.891827 |
Location | 4,033,091 – 4,033,182 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 93.36 |
Mean single sequence MFE | -23.92 |
Consensus MFE | -19.20 |
Energy contribution | -19.10 |
Covariance contribution | -0.10 |
Combinations/Pair | 1.07 |
Mean z-score | -1.88 |
Structure conservation index | 0.80 |
SVM decision value | 0.97 |
SVM RNA-class probability | 0.891827 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4033091 91 + 22224390 UUUCCGAGUUGUUUUGUUUGGACAGCGAUUGGUUGGUUCUCUAUCGUUUUGUUUGCCUAAUGGUAAAUGGGCAAAUGGCAAAUGGCGAUGG ...(((((((((((.....)))))))..))))........(((((((((..((((((((........))))))))..).....)))))))) ( -25.80) >DroSec_CAF1 46794 91 + 1 UUUCCAAGUUGUUUUGUUUGGACAGCGAUUGGUUGGUUCUCUAUCGUUUUGUUUGCCUAAUGGUAAAUGGGCAAAUGGCAAAUGGCGAUGG ...(((.(((((((.....)))))))...)))........(((((((((..((((((((........))))))))..).....)))))))) ( -26.20) >DroSim_CAF1 43047 91 + 1 UUUCCGAGUUGUUUUGUUUGGACAGCGAUUGGUUGGUUCUCUAUCGUUUUGUUUGCCUAAUGGUAAAUGGGCAAAUGGCAAAUGGCGAUGG ...(((((((((((.....)))))))..))))........(((((((((..((((((((........))))))))..).....)))))))) ( -25.80) >DroEre_CAF1 46571 83 + 1 UUUUCGAGUUGUUUUGUUUGGACAGCGAUUGGUUGGUUCUCUAUCGUUUUGUUUGCCUAAUGGUAAAUG-G-------CAAAUGGCGAUGG .......(((((((.....)))))))..............((((((((..(((((((...........)-)-------))))))))))))) ( -22.00) >DroYak_CAF1 45244 84 + 1 UUUUCGAGUUGUUUUGUUUGGACAGCGAUUGGUUGGUUCUCUAUCGUUUUGUUUGCCUAAUGGUAAAUGGG-------CAAAUGGCAAUGG .......(((((((.....)))))))..................(((((..((((((((........))))-------))))..).)))). ( -19.80) >consensus UUUCCGAGUUGUUUUGUUUGGACAGCGAUUGGUUGGUUCUCUAUCGUUUUGUUUGCCUAAUGGUAAAUGGGCAAAUGGCAAAUGGCGAUGG ...(((((((((((.....)))))))..))))........((((((((..(((((((....)))))))..((.....))....)))))))) (-19.20 = -19.10 + -0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:05 2006