Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,031,510 – 4,031,609 |
Length | 99 |
Max. P | 0.550974 |
Location | 4,031,510 – 4,031,609 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 89.22 |
Mean single sequence MFE | -25.54 |
Consensus MFE | -22.38 |
Energy contribution | -23.38 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.13 |
Mean z-score | -1.28 |
Structure conservation index | 0.88 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.550974 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4031510 99 + 22224390 GUACCUGAUGAUCUUUUAAUUAACACAUAGCC---UGUUGUUGAAGGAAUCAGGGCAUUGCAAUUGAGGGCUUAACCCAUUGAUGGCUAUGAAGGUAGCUGU ((.((((((..(((((((((.((((.......---)))))))))))))))))))))......((..((((.....))).)..))((((((....)))))).. ( -26.70) >DroSec_CAF1 45235 99 + 1 GUACCUGAUGAUCUUUUAAUUAACACAUAGCC---UGUUGUUGAAGGAUUCAGGGCAUUGCAAUUGAGGGCUUAAUCAAUUGAUGGCAAUGAAGGUAGCUGU .(((((....((((((((((.((((.......---))))))))))))))(((..((....(((((((........)))))))...))..))))))))..... ( -26.80) >DroSim_CAF1 41478 94 + 1 GUACCUGAUGAUCUUUUAAUUAACACAUAGCC---CGUUGUUGAAGGAUUCAGGGCAUUGCAAUUGAGGGCUUAACCCAUUGAUGGCAAUGAAGGUA----- ...(((((..((((((((((.(((........---.)))))))))))))))))).((((((.((..((((.....))).)..)).))))))......----- ( -29.20) >DroEre_CAF1 44906 99 + 1 GUACCUGAUGAUCUUUUAAUUAACACAUAGCC---UGUCGUUGAAGGAUUCAGGGCAUUGCAAUUGAGGGCUUAACCCAUUGAUAGCAACGGGGGUAAUUGU ((.(((((..((((((((((..(((.......---))).))))))))))))))))).((((.((..((((.....))).)..)).))))............. ( -24.30) >DroYak_CAF1 43660 102 + 1 GUACCUGAUGAUCUUUUAAUUAACACAUAGCCUCCUGAUGUUAAGGGAUUCAGGGCAUUGCAAUUGAGAGCUUAACCCAUUGAAAGCGAUGAAGGUAAUUCU .(((((..(((.(((((((((....((..(((((((........)))).....)))..)).))))))))).)))...(((((....))))).)))))..... ( -20.70) >consensus GUACCUGAUGAUCUUUUAAUUAACACAUAGCC___UGUUGUUGAAGGAUUCAGGGCAUUGCAAUUGAGGGCUUAACCCAUUGAUGGCAAUGAAGGUAACUGU ...(((((..((((((((((.(((............)))))))))))))))))).((((((.((..((((.....))).)..)).))))))........... (-22.38 = -23.38 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:05 2006