Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,030,776 – 4,030,888 |
Length | 112 |
Max. P | 0.525376 |
Location | 4,030,776 – 4,030,888 |
---|---|
Length | 112 |
Sequences | 3 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 95.21 |
Mean single sequence MFE | -43.47 |
Consensus MFE | -36.94 |
Energy contribution | -39.00 |
Covariance contribution | 2.06 |
Combinations/Pair | 1.05 |
Mean z-score | -1.95 |
Structure conservation index | 0.85 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.524666 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4030776 112 + 22224390 GUGUGUGGCACAUUUUUGCUGACACCGAGUUGCGUGACUUGACAGUGAGCAAUCGAUGUUGGAUGUUGCAGGUUGCCCAACAGUGAUGUUGUUCGCCGGCAGCGGCAGCAGU (.((((((((......)))).)))))..(((((.....(..(((.(((....))).)))..).((((((.(((.(..(((((....)))))..)))).)))))))))))... ( -39.50) >DroSec_CAF1 44531 109 + 1 GUGUGUGGCAU-UUUUUGCUGACACCGAGUUGCGUGACUCGACAGUGAGCAAUCGAUGUUGGAUGUUGCAGGUUGC-CAGCAGUGAUGUUGCUCGCCGGCAGCGGCAGCAG- ..((.((((((-(..(((((.((..((((((....))))))...)).)))))..))))))).))(((((..(((((-(.(((((......))).)).)))))).)))))..- ( -44.60) >DroSim_CAF1 40768 110 + 1 GUGUGUGGCAU-UUUUUGCUGACACCGAGUUGCGUGACUCGACAGUGAGCAAUCGAUGUUGGAUGUUGCAGGUUGC-CAGCAGCGAUGUUGCUCGCCGGCAGCGGCAGCAGU ..((.((((((-(..(((((.((..((((((....))))))...)).)))))..))))))).))(((((..(((((-(.((((((....)))).)).)))))).)))))... ( -46.30) >consensus GUGUGUGGCAU_UUUUUGCUGACACCGAGUUGCGUGACUCGACAGUGAGCAAUCGAUGUUGGAUGUUGCAGGUUGC_CAGCAGUGAUGUUGCUCGCCGGCAGCGGCAGCAGU (.((((((((......)))).)))))..(((((.....((((((.(((....))).)))))).((((((.(((....(((((....)))))...))).)))))))))))... (-36.94 = -39.00 + 2.06)
Location | 4,030,776 – 4,030,888 |
---|---|
Length | 112 |
Sequences | 3 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 95.21 |
Mean single sequence MFE | -32.13 |
Consensus MFE | -27.32 |
Energy contribution | -27.43 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.03 |
Mean z-score | -1.95 |
Structure conservation index | 0.85 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.525376 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4030776 112 - 22224390 ACUGCUGCCGCUGCCGGCGAACAACAUCACUGUUGGGCAACCUGCAACAUCCAACAUCGAUUGCUCACUGUCAAGUCACGCAACUCGGUGUCAGCAAAAAUGUGCCACACAC ..(((((..(.(((.((.(..(((((....)))))..)..)).))).).....(((((((((((..(((....)))...)))).))))))))))))....((((...)))). ( -30.60) >DroSec_CAF1 44531 109 - 1 -CUGCUGCCGCUGCCGGCGAGCAACAUCACUGCUG-GCAACCUGCAACAUCCAACAUCGAUUGCUCACUGUCGAGUCACGCAACUCGGUGUCAGCAAAAA-AUGCCACACAC -.(((((..(((((((((.((........))))))-)))....))........(((((((((((..(((....)))...)))).))))))))))))....-........... ( -30.90) >DroSim_CAF1 40768 110 - 1 ACUGCUGCCGCUGCCGGCGAGCAACAUCGCUGCUG-GCAACCUGCAACAUCCAACAUCGAUUGCUCACUGUCGAGUCACGCAACUCGGUGUCAGCAAAAA-AUGCCACACAC ..(((((..(((((((((.(((......)))))))-)))....))........(((((((((((..(((....)))...)))).))))))))))))....-........... ( -34.90) >consensus ACUGCUGCCGCUGCCGGCGAGCAACAUCACUGCUG_GCAACCUGCAACAUCCAACAUCGAUUGCUCACUGUCGAGUCACGCAACUCGGUGUCAGCAAAAA_AUGCCACACAC ..((((((((....)))).)))).......(((((.((.....))........(((((((((((..(((....)))...)))).))))))))))))................ (-27.32 = -27.43 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:04 2006